View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2538_high_16 (Length: 260)
Name: NF2538_high_16
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2538_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 40456353 - 40456564
Alignment:
| Q |
23 |
atcatcaacaaaactgataaaccatttt-cttccattatgtgtagactgtggggaagggccccaaacatctgtgtgtactaatgaaaaaggaaaaacaga |
121 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40456353 |
atcatcaacaaaactgataaaccatttttcttccattatgtgtagactgcggggaagggccccaaacatctgtgtgtactaatgaaaaaggaaaaacaga |
40456452 |
T |
|
| Q |
122 |
ttttttattgcttaagggaaaaacaacacgatgactttttgccattacacaagtttcacaaagaaaatctgaaatattgcatttatgaaataacgatgga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40456453 |
ttttttattgcttaagggaaaaacaacacgatgactttttgcca-tacacaagtttcacaaagaaaatctgaaatattgcatttatgaaataacgatgga |
40456551 |
T |
|
| Q |
222 |
aacaatttcttta |
234 |
Q |
| |
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||||||||||||| |
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|
| T |
40456552 |
aacaatttcttta |
40456564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 40089862 - 40089827
Alignment:
| Q |
146 |
aacacgatgactttttgccattacacaagtttcaca |
181 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
40089862 |
aacacgatggctttttgccattacacaagtttcaca |
40089827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 56392382 - 56392615
Alignment:
| Q |
23 |
atcatcaacaaaactgataaaccattttcttccattatgtgtagactgtggggaagggccccaaacatctgtgtgtactaatgaaaaaggaaaaacagat |
122 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||| ||||| ||||||| ||||||||||||||| || |||||||| |||||||||||| ||| | |
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| T |
56392382 |
atcatcaacaaaactgataaaccattttttcccattatgcgtagattgtggggcagggccccaaacatcagtatgtactaacgaaaaaggaaaatcagtt |
56392481 |
T |
|
| Q |
123 |
tttttattgcttaagggaaaaacaacacgatgactttttgccattacacaagtttcacaaagaaaatctgaaatattgcatttatgaaataacgatggaa |
222 |
Q |
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||||||||| |||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56392482 |
tttttattggttaaaggataaacagcacgatggctttttgccattacacaagtttcacaaagaaaatctgaaatattgcatttatgaaataacgatggaa |
56392581 |
T |
|
| Q |
223 |
acaatttctttagataactaaaagagggatgtcc |
256 |
Q |
| |
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| ||||||||||||||||||||||| ||||||| |
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| T |
56392582 |
ataatttctttagataactaaaagaaagatgtcc |
56392615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 27516623 - 27516853
Alignment:
| Q |
23 |
atcatcaacaaaactgataaaccattttcttccattatgtgtagactgtggggaagggccccaaacatctgtgtgtactaatgaaaaaggaaaaacagat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||| ||||| ||||||| ||||||||||||||| || |||||||| |||||||||||| ||| | |
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| T |
27516623 |
atcatcaacaaaactgataaaccattttttcccattatgcgtagattgtggggcagggccccaaacatcagtatgtactaacgaaaaaggaaaatcagtt |
27516722 |
T |
|
| Q |
123 |
tttttattgcttaagggaaaaacaacacgatgactttttgccattacacaagtttcacaaagaaaatctgaaatattgcatttatgaaataacgatggaa |
222 |
Q |
| |
|
||||||||| |||| ||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27516723 |
tttttattgattaaaggataaacaaaacgatggctttttgccattacacaagtttcacaaagaaaatctgaaatattgcatttatgaaataacgatggaa |
27516822 |
T |
|
| Q |
223 |
acaatttctttagataactaaaagagggatg |
253 |
Q |
| |
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| ||||| ||||||||||||||||| ||||| |
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|
| T |
27516823 |
ataatttatttagataactaaaagaaggatg |
27516853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 4243422 - 4243387
Alignment:
| Q |
146 |
aacacgatgactttttgccattacacaagtttcaca |
181 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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|
| T |
4243422 |
aacacgatggctttttgccattacacaagtttcaca |
4243387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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