View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2538_high_17 (Length: 251)

Name: NF2538_high_17
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2538_high_17
NF2538_high_17
[»] chr4 (5 HSPs)
chr4 (60-246)||(3221474-3221660)
chr4 (106-246)||(1362907-1363047)
chr4 (106-232)||(46625399-46625525)
chr4 (1-68)||(3220448-3220516)
chr4 (106-227)||(39249833-39249953)
[»] chr8 (2 HSPs)
chr8 (106-237)||(4533222-4533353)
chr8 (106-232)||(23665774-23665900)
[»] chr1 (3 HSPs)
chr1 (106-246)||(52842333-52842465)
chr1 (112-227)||(10531822-10531937)
chr1 (112-191)||(2902401-2902480)
[»] chr7 (2 HSPs)
chr7 (106-246)||(32885387-32885527)
chr7 (113-197)||(9563736-9563820)
[»] chr3 (1 HSPs)
chr3 (106-187)||(46616301-46616382)
[»] chr2 (2 HSPs)
chr2 (107-188)||(13543000-13543080)
chr2 (106-179)||(37088700-37088773)
[»] chr6 (2 HSPs)
chr6 (112-166)||(4334515-4334569)
chr6 (106-235)||(13493452-13493581)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 60 - 246
Target Start/End: Original strand, 3221474 - 3221660
Alignment:
Q  60 tactctcaatataggtaagtgtttgttttgctttacctcgtgttggtttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaa 159  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3221474 tactctcaatataggtaagtgttagttttgctttacctcgtgttggtttgtagctattttatggagtatttggcgtgcacgtaatgcttgtttatgggaa 3221573  T
Q  160 caaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggatactgttcaagatttcatgtggtgcaaccgtccctatgctact 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  3221574 caaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggatactgttcaagatttcatgtggtgcaaccgtcccaatgatact 3221660  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 106 - 246
Target Start/End: Original strand, 1362907 - 1363047
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||||||||| ||||||||||||| |||||| |||| | |||| |||||||||||||||||||||||||||||  || ||||||| ||||| |||||||    
T  1362907 tttgtagctatattatggagtatttggcgtgcgcgtagttcttgcttatgggaacaaaaaccagtcaatgcacacgcaacttgtgttctagcattggata 1363006  T
Q  206 ctgttcaagatttcatgtggtgcaaccgtccctatgctact 246  Q
    |||||  ||||||||||||||||||||||||| ||| ||||    
T  1363007 ctgttagagatttcatgtggtgcaaccgtcccaatgatact 1363047  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 46625525 - 46625399
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||||| ||| ||||||||||||| ||| || |||||||||||||||||||| | ||||||||||||| || |  ||||||||||  |||| |||||||    
T  46625525 tttgtagatatcttatggagtatttggcgcgcgcgtaatgcttgtttatgggagcgaaaaccagtcaattcaaactcatcttgtgtcatagcattggata 46625426  T
Q  206 ctgttcaagatttcatgtggtgcaacc 232  Q
     | ||| ||  |||| |||||||||||    
T  46625425 gtattcgaggcttcaagtggtgcaacc 46625399  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3220448 - 3220516
Alignment:
Q  1 acactcttcgatgccgaatgggnnnnnnn-tccataaccaaagaaaagaaaaattggtattactctcaa 68  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  3220448 acactcttcgatgccgaatgggaaaaaaaatccataaccaaagaaaagaaaaattggtattactctcaa 3220516  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 39249833 - 39249953
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||| ||||||||||| ||||||| |||||| |||||||||||||||| ||| ||||||   |||||||  ||  |||||||||| |||||  ||||||    
T  39249833 tttgtcgctattttatgaagtatttggcgtgcgcgtaatgcttgtttat-ggagcaaaaatttgtcaatgttcatgcatcttgtgttctagccctggata 39249931  T
Q  206 ctgttcaagatttcatgtggtg 227  Q
    | ||||  |||| |||||||||    
T  39249932 cagttcgcgattacatgtggtg 39249953  T

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Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 4533222 - 4533353
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||||||||| ||||||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||||  |||||||||| ||||| |||||||    
T  4533222 tttgtagctatattatggagtatttggcgtgcgcgtattgcttgcttatgggaacaaaaaccagtcaatgcacacgcatcttgtgttctagcattggata 4533321  T
Q  206 ctgttcaagatttcatgtggtgcaaccgtccc 237  Q
    ||||||||||||||||||||||||||||||||    
T  4533322 ctgttcaagatttcatgtggtgcaaccgtccc 4533353  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 23665900 - 23665774
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||||||||| ||||||||||||| | |||| ||||||||||  ||||||||||||||||| ||||||||||| ||| ||||||| ||||  |||| ||    
T  23665900 tttgtagctatattatggagtatttggagtgcgcgtaatgctttcttatgggaacaaaaacccgtcaatgcacacacaacttgtgttctagtattggtta 23665801  T
Q  206 ctgttcaagatttcatgtggtgcaacc 232  Q
    |||||| ||||||||||||||||||||    
T  23665800 ctgttcgagatttcatgtggtgcaacc 23665774  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 52842465 - 52842333
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||||||||| ||| ||||||||| | ||||     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||   | |||    
T  52842465 tttgtagctatattaaggagtatttggtgtgc-----atgcttgtttatgggaacaaaaaccagtcaatgcacaagcatcttgtgtgctagc---gaata 52842374  T
Q  206 ctgttcaagatttcatgtggtgcaaccgtccctatgctact 246  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  52842373 ctgttcaagatttcatgtggtgcaaccgtcccaatgatact 52842333  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 10531937 - 10531822
Alignment:
Q  112 gctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggatactgttc 211  Q
    ||||||| ||||||||||| ||| || |||||||||||||||||||| |||||||| |||||||||||  ||| |||||| |||||  | ||||| ||||    
T  10531937 gctatttcatggagtatttggcgcgcgcgtaatgcttgtttatgggagcaaaaacctgtcaatgcacatgcattttgtgtcctagcccttgatacggttc 10531838  T
Q  212 aagatttcatgtggtg 227  Q
     ||||| |||||||||    
T  10531837 gagattacatgtggtg 10531822  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 2902401 - 2902480
Alignment:
Q  112 gctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgt 191  Q
    |||||||||| |||||| | ||| |||||||||| |||||||||||| |||||  | |||||||||||  ||||||||||    
T  2902401 gctattttattgagtatatggcgcgcacgtaatggttgtttatgggagcaaaattctgtcaatgcacatgcatcttgtgt 2902480  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 32885527 - 32885387
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||||||||| ||||||| | ||| || ||| |||||| |||| || | |||||||||||||| ||||||||| | ||||||||| ||||| |||||||    
T  32885527 tttgtagctatattatggaattttttgcctgcgcgtaattcttgcttttaggaacaaaaaccagccaatgcacacatatcttgtgttctagcattggata 32885428  T
Q  206 ctgttcaagatttcatgtggtgcaaccgtccctatgctact 246  Q
     ||||| ||||||||||| ||||||||||||| ||| ||||    
T  32885427 ttgttcgagatttcatgtcgtgcaaccgtcccaatgatact 32885387  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 9563736 - 9563820
Alignment:
Q  113 ctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagc 197  Q
    ||||||||| |||||||| ||| || |||||||||||||||||||| |||||||| |||||||||||  |||||||||| |||||    
T  9563736 ctattttatagagtatttggcgcgcgcgtaatgcttgtttatgggagcaaaaacctgtcaatgcacatgcatcttgtgtcctagc 9563820  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 46616382 - 46616301
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatctt 187  Q
    ||||||||||| ||||||||||||| ||| || ||||||||||||||||||||  ||||||||||||||||| | |||||||    
T  46616382 tttgtagctatcttatggagtattttgcgagcgcgtaatgcttgtttatgggagaaaaaaccagtcaatgcaaacacatctt 46616301  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 13543000 - 13543080
Alignment:
Q  107 ttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttg 188  Q
    |||||||||||| || |||| ||| || ||||||||||||||||||||||||  ||||||  ||| ||||||| ||||||||    
T  13543000 ttgtagctattt-attgagtgtttggcatgcacgtaatgcttgtttatgggaggaaaaacttgtcgatgcacatacatcttg 13543080  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 37088700 - 37088773
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcaca 179  Q
    ||||||| ||||||||||||||||| | | |  || ||||| ||||||||||| |||||||  |||||||||||    
T  37088700 tttgtaggtattttatggagtatttggtgcgagcgcaatgcatgtttatgggagcaaaaacttgtcaatgcaca 37088773  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 4334515 - 4334569
Alignment:
Q  112 gctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaac 166  Q
    ||||||||||||||||||| |||| ||||  |||||||||||||| ||| |||||    
T  4334515 gctattttatggagtatttggcgttcacgcgatgcttgtttatggaaacgaaaac 4334569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 13493452 - 13493581
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||| |||||||| |||||||||| |||  | |||||||| || |||||| ||||||||   || |||||  ||| ||||| |||  |||| || ||||    
T  13493452 tttgtggctattttgtggagtatttggcgcactcgtaatgcatgcttatggaaacaaaaatttgttaatgctaaaatatcttatgttttagctttagata 13493551  T
Q  206 ctgttcaagatttcatgtggtgcaaccgtc 235  Q
    | |||| |||||  ||||||||||||||||    
T  13493552 cggttcgagattatatgtggtgcaaccgtc 13493581  T

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