View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2538_high_1_N (Length: 759)
Name: NF2538_high_1_N
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2538_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 7e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 377 - 751
Target Start/End: Original strand, 2826922 - 2827283
Alignment:
| Q |
377 |
caatatcatgccattttaattttctgcagtcattcctattcctagctggttttgccgccttaggagttctaacatcttgtttgagatttctcaccaaagt |
476 |
Q |
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| T |
2826922 |
caatatcatgccatttttattttttgcagtcattccta------gccggtttagccgcctcaggagttctaacatcttgtttgagatttctcaccaaagt |
2827015 |
T |
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| Q |
477 |
ggcttttgagaaatcggatgacggacttcgacaaggggaatgtatgttacccttttgcactagcgaacatataaatcaaaataagttttactcacaaaaa |
576 |
Q |
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|| ||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |
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| T |
2827016 |
ggtttttgagaaatcggaggacggacttcgaagaggggcatgtatgctacccttttgcacttgcgaacatataaatcaaaatcagttttagtcacaaaaa |
2827115 |
T |
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| Q |
577 |
tttattttccattctaaaagttatat-ctgcatatatgatagacttaatagttagtatttaccaataannnnnnnnnnngcagtgctattctttggaatc |
675 |
Q |
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| T |
2827116 |
catattttccattctaaaagttctatgctgaatatatcatagacttaa-------tattcactaataa-ttttttttttgcagtgctattctttggaata |
2827207 |
T |
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| Q |
676 |
tctatcctctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattatc |
751 |
Q |
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| T |
2827208 |
tctaccttctttgagtttttgtgcattattctctatgcaatctacttccctaagttgaccattgtaaaatattatc |
2827283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 160 - 301
Target Start/End: Original strand, 2819861 - 2820003
Alignment:
| Q |
160 |
tctgtcttccttatctatacttcaatttcagatcgtaagtttttatttcaatttcataatataacttatacccatgcctattgttcacaaaatgttaata |
259 |
Q |
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| T |
2819861 |
tctgtcttccttatctatacttcaatttcacatcgtaagtttttatttcaatttcataatataacttatacccatgcctattcttcacaaaatgttaata |
2819960 |
T |
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| Q |
260 |
aataatttgttttggagaaatatttaa-ctgcttttgtattct |
301 |
Q |
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| T |
2819961 |
aataatttgttttggagaaatatttaagctgcttttgtattct |
2820003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 377 - 535
Target Start/End: Original strand, 2823522 - 2823674
Alignment:
| Q |
377 |
caatatcatgccattttaattttctgcagtcattcctattcctagctggttttgccgccttaggagttctaacatcttgtttgagatttctcaccaaagt |
476 |
Q |
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| T |
2823522 |
caatatcatgccatttttattttctgcagtcattc------ctagctggtttagtcgcctcaggagttctaacgtcttgtttgagatttctcaccaaagt |
2823615 |
T |
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| Q |
477 |
ggcttttgagaaatcggatgacggacttcgacaaggggaatgtatgttacccttttgca |
535 |
Q |
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| T |
2823616 |
ggcttttgaggaatcggatgacggacttcgaaaagaggcatgtatgttacccttttgca |
2823674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 655 - 750
Target Start/End: Original strand, 2820017 - 2820112
Alignment:
| Q |
655 |
gcagtgctattctttggaatctctatcctctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattat |
750 |
Q |
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| T |
2820017 |
gcagtgctattctttggaatctctatcttctttgagttgttgtgcattattctctatgcaatctactttcctaagttgtccattgtagagtattat |
2820112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 2819559 - 2819593
Alignment:
| Q |
60 |
cttctttaagttttggtgatcaacatgtttttgat |
94 |
Q |
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| T |
2819559 |
cttctttaagttttggtgatcaacatgtttttgat |
2819593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 3405898 - 3405849
Alignment:
| Q |
159 |
ttctgtcttccttatctatacttcaatttcagatcgtaagtttttatttc |
208 |
Q |
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| T |
3405898 |
ttctgtcttccttatctatacttcaatttcagattgtaagtttttatttc |
3405849 |
T |
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