View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2538_high_8 (Length: 302)

Name: NF2538_high_8
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2538_high_8
NF2538_high_8
[»] chr1 (1 HSPs)
chr1 (1-301)||(52622079-52622377)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 52622079 - 52622377
Alignment:
Q  1 atgaaagagtctccttatctggtcaactgttgcaggcaccattgttgctgggcagcgcttatactgtaatgagcaaaaatacgcacacagtaaactaaga 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52622079 atgaaagagtctccttatctggtcgactgttgcaggcaccatcgttgctgggcagcgcttatactgtaatgagcaaaaatacgcacacagtaaactaaga 52622178  T
Q  101 attagacgggaaaaagcgggagtggaagggacatcaattgattatgttctctttatccaatcttttacagataaacctttgtctcatgtctagttcgtcc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52622179 attagacgggaaaaagcgggagtggaggggacatcaattgattatgttctctttatccaatcttttacagataaacctttgtctcatatctagttcgtcc 52622278  T
Q  201 cacattgttcaagtataatgaaaatgttagatatacagtattaatatgacagtaagagttataacgtttacaaaaatttccctcaagtattatctaccca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||| ||||||    
T  52622279 cacattgttcaagtataatgaaaatgttagatatacagtattaatatgacagtaagagt--taacgtttacaaaaatttccctcaagttttatgtaccca 52622376  T

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