View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2538_low_11 (Length: 324)
Name: NF2538_low_11
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2538_low_11 |
 | |
|
| [»] scaffold0291 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 96 - 251
Target Start/End: Complemental strand, 29048258 - 29048103
Alignment:
| Q |
96 |
agtgtagactttagaccgaatctgagcatagttagctgaaaagctttcattaggagacattgaatcggaatgccaagcatcaggaaaagcctcatcagct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29048258 |
agtgtagactttagaccgaatctgagcatagttagctgaaaagctttcattaggagacattgaatcggaatgccaagcatcaggaaaagcctcatcagct |
29048159 |
T |
|
| Q |
196 |
tgtgtgccatgccagacagcaagcattatctctccagtattcatcatttcgccttt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29048158 |
tgtgtgccatgccagacagcaagcattatctctccagtattcatcatttcgccttt |
29048103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 4373 - 4417
Alignment:
| Q |
156 |
tgaatcggaatgccaagcatcaggaaaagcctcatcagcttgtgt |
200 |
Q |
| |
|
|||||| |||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
4373 |
tgaatctgaatgccatgcctcaggaaaagcttcatcagcttgtgt |
4417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University