View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2538_low_13 (Length: 319)

Name: NF2538_low_13
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2538_low_13
NF2538_low_13
[»] chr4 (2 HSPs)
chr4 (102-228)||(26171554-26171676)
chr4 (220-319)||(26171141-26171240)
[»] chr7 (1 HSPs)
chr7 (99-302)||(42448314-42448510)
[»] chr1 (2 HSPs)
chr1 (99-236)||(6612997-6613130)
chr1 (287-319)||(6613142-6613174)
[»] chr2 (1 HSPs)
chr2 (176-235)||(21733334-21733393)
[»] chr3 (1 HSPs)
chr3 (176-235)||(3671832-3671891)
[»] chr6 (3 HSPs)
chr6 (206-303)||(26064369-26064459)
chr6 (206-303)||(26084338-26084428)
chr6 (239-301)||(25516101-25516164)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 26171676 - 26171554
Alignment:
Q  102 taaatatgaattccagaaatgtcttaagctgcatatataacttcgaaacaggaacaaattgtttctctatgtattgggttcatggcatgataacttggtg 201  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26171676 taaatatgaattccagaaatgtcttaagctgcata----acttcgaaacaggaacaaattgttgctctatgtattgggttcatggcatgataacttggtg 26171581  T
Q  202 ttgaaagagattactgcataaagtgaa 228  Q
    |||||||||||||||||||||||||||    
T  26171580 ttgaaagagattactgcataaagtgaa 26171554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 220 - 319
Target Start/End: Complemental strand, 26171240 - 26171141
Alignment:
Q  220 taaagtgaatatagtagcagagtttgtggttctaattatgtgtttttatctctttatatcaaattgctgcaattttgactttctttatatcattaaggtt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26171240 taaagtgaatatagtagcagagtttgtggttctaattatgtgtttttatctctttatatcaaattgctgcaattttgactttctttatatcattaaggtt 26171141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 99 - 302
Target Start/End: Complemental strand, 42448510 - 42448314
Alignment:
Q  99 taataaatatgaattccagaaatgtcttaagctgcatatataacttcgaaacaggaa-caaattgtttctctatgtattgggttcatggcatgataactt 197  Q
    ||||||||| ||| ||||| ||||| ||||||||||||    ||||| ||||||||| ||  ||||| ||||| |||||| ||||||||||||| |||||    
T  42448510 taataaataagaaatccagtaatgtgttaagctgcata----acttccaaacaggaagcactttgttgctctaagtattgtgttcatggcatgacaactt 42448415  T
Q  198 ggtgttgaaagagattactgcataaagtgaatatagtagcagagtttgtggttctaattatgtgtttttatctctttatatcaaattgctgcaattttga 297  Q
    |||||||||||||||| ||||| |  |||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||| |||||||||||    
T  42448414 ggtgttgaaagagattgctgcaga--gtgaatatagtagcagagcttgtggttctaa--atgtgtttttatctctttatatcaaattggtgcaattttga 42448319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 99 - 236
Target Start/End: Original strand, 6612997 - 6613130
Alignment:
Q  99 taataaatatgaattccagaaatgtcttaagctgcatatataacttcgaaacaggaacaaattgtttctctatgtattgggttcatggcatgataacttg 198  Q
    ||||||||||||||||||| ||||| ||||||||||||    ||||| |||||| | || | |||| ||||||||||||||||||||||| || ||||||    
T  6612997 taataaatatgaattccaggaatgtgttaagctgcata----acttccaaacagaagcacaatgttgctctatgtattgggttcatggcacgacaacttg 6613092  T
Q  199 gtgttgaaagagattactgcataaagtgaatatagtag 236  Q
    |||||||||||||| |||||||||||||||||||||||    
T  6613093 gtgttgaaagagatcactgcataaagtgaatatagtag 6613130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 6613142 - 6613174
Alignment:
Q  287 tgcaattttgactttctttatatcattaaggtt 319  Q
    |||||||||||||||||||||||||| ||||||    
T  6613142 tgcaattttgactttctttatatcatcaaggtt 6613174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 21733334 - 21733393
Alignment:
Q  176 tgggttcatggcatgataacttggtgttgaaagagattactgcataaagtgaatatagta 235  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21733334 tgggttcatggcatgataacttggtgttgaaaaagattactgcataaagtgaatatagta 21733393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 3671891 - 3671832
Alignment:
Q  176 tgggttcatggcatgataacttggtgttgaaagagattactgcataaagtgaatatagta 235  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  3671891 tgggttcttggcatgacaacttggtgttgaaagatattactgcataaagtgaatatagta 3671832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 303
Target Start/End: Original strand, 26064369 - 26064459
Alignment:
Q  206 aagagattactgcataaagtgaatatagtagcagagtttgtggttctaattatgtgtttttatctctttatatcaaattgctgcaattttgactttct 303  Q
    ||||| ||| |||| ||||||||||||||     ||||||||||||||||| |||   |||| ||||||||||||||||| ||||||||| |||||||    
T  26064369 aagaggttaatgcagaaagtgaatatagtt----agtttgtggttctaattgtgt---tttacctctttatatcaaattggtgcaatttttactttct 26064459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 303
Target Start/End: Original strand, 26084338 - 26084428
Alignment:
Q  206 aagagattactgcataaagtgaatatagtagcagagtttgtggttctaattatgtgtttttatctctttatatcaaattgctgcaattttgactttct 303  Q
    ||||| ||| |||| ||||||||||||||     ||||||||||||||||| |||   |||| ||||||||||||||||| ||||||||| |||||||    
T  26084338 aagaggttaatgcagaaagtgaatatagtt----agtttgtggttctaattgtgt---tttacctctttatatcaaattggtgcaatttttactttct 26084428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 25516101 - 25516164
Alignment:
Q  239 gagtttgtggttctaattatgtgttttt-atctctttatatcaaattgctgcaattttgacttt 301  Q
    |||||||||||||||| | ||| ||||| ||| ||||||||||||||| ||||||||| |||||    
T  25516101 gagtttgtggttctaaatgtgttttttttatcgctttatatcaaattggtgcaatttttacttt 25516164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University