View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2538_low_17 (Length: 289)
Name: NF2538_low_17
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2538_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 15514815 - 15514648
Alignment:
| Q |
43 |
cacagaaacagtaaaaaggtaaaattataagcagactctaaaaagctaacgacattaactttttacatatttgttgtagatccaaaaataaagtctccac |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15514815 |
cacagaaacagtaaaaaggtaaaattataagcagactctaaaaagctaacgacattaactttttacatatttgttgtagatccaaaaataaagtctccac |
15514716 |
T |
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| Q |
143 |
aacttgaaaattccaaattgcaaatttcttatgaagattccagctgagatagtgatccaaatttagca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15514715 |
aacttgaaaattccaaattgcaaatttcttatgaagattccagctgagatagtgatccaaatttagca |
15514648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 15857368 - 15857538
Alignment:
| Q |
43 |
cacagaaacagtaaaa---aggtaaaattataagcagactctaaaaagctaacgacattaactttttacatatttgttgtagatccaaaaataaagtctc |
139 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15857368 |
cacagaaacagtaaaaaaaaggtaaaattataagcagactctaaaaagctaacgacattaaatttttacatatttgttgtagatccaaaaataaagtctc |
15857467 |
T |
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| Q |
140 |
cacaacttgaaaattccaaattgcaaatttcttatgaagattccagctgagatagtgatccaaatttagca |
210 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15857468 |
cacaacttgaaaattccaaattgcaaatttcttaagaagattccagctgagatagtgatccaaatttagca |
15857538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 15534378 - 15534211
Alignment:
| Q |
43 |
cacagaaacagtaaaaaggtaaaattataagcagactctaaaaagctaacgacattaactttttacatatttgttgtagatccaaaaataaagtctccac |
142 |
Q |
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| T |
15534378 |
cacagaaacattaaaaaggtaaaattataagcagactctaaaaagctaccagcattaactttttacatatttgttacagatccaaaaataaagtctccac |
15534279 |
T |
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| Q |
143 |
aacttgaaaattccaaattgcaaatttcttatgaagattccagctgagatagtgatccaaatttagca |
210 |
Q |
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||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15534278 |
aacttgaaaatcccaatatgcaaatttcttaagaagattccagctgagatagtgatccaaatttagca |
15534211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 15424965 - 15424805
Alignment:
| Q |
43 |
cacagaaacagtaaaaaggtaaaattataagcagactctaaaaagctaacgacattaactttttacatatttgttgtagatccaaaaa-taaagtctcca |
141 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |||||| |||| | |||||||||||||| |||||||| ||||| ||||||||||| |
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| T |
15424965 |
cacagaaacagtaaaaagataaaattataagcagacactaaaatgctaccagcattaactttttac--------tgtagatcaaaaaaataaagtctcca |
15424874 |
T |
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| Q |
142 |
caacttgaaaattccaaattgcaaatttcttatgaagattccagctgagatagtgatccaaatttagca |
210 |
Q |
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||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
15424873 |
caactagaaaattccaaattgcaaacttcttaagaagattccagctgagatagtgatcaaaatttagca |
15424805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 18374344 - 18374219
Alignment:
| Q |
62 |
taaaattataagcagactctaaaaagctaacgacattaactttttacatatttgttgtagatccaaaaataaagtctccacaacttgaaaattccaaat- |
160 |
Q |
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|||||||||||| |||||||||||||||| | |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
18374344 |
taaaattataaggagactctaaaaagctaccagcattaactatttacatatttgttgttgatccaaaaataaagtctccacaacttgaaaat-ccaaata |
18374246 |
T |
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| Q |
161 |
tgcaaatttcttatgaagattccagct |
187 |
Q |
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| T |
18374245 |
tacaaatttcttaagaagattccagct |
18374219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 184
Target Start/End: Complemental strand, 18377827 - 18377687
Alignment:
| Q |
43 |
cacagaaacagtaaaaaggtaaaattataagcagactctaaaaagctaacgacattaactttttacatatttgttgtagatccaaaaataaagtctccac |
142 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
18377827 |
cacagaaacag-aaaaagttaaaattataggcacactctaaaaaactacgtgcattaactatttacatatttgttgtagatccaaaaataaagtctccgc |
18377729 |
T |
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| Q |
143 |
aacttgaaaattccaaat-tgcaaatttcttatgaagattcca |
184 |
Q |
| |
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||||||||||| |||||| | ||||||||||| |||||||||| |
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| T |
18377728 |
aacttgaaaat-ccaaatatacaaatttcttaagaagattcca |
18377687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 15481584 - 15481671
Alignment:
| Q |
123 |
tccaaaaataaagtctccacaacttgaaaattccaaattgcaaatttcttatgaagattccagctgagatagtgatccaaatttagca |
210 |
Q |
| |
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||||||| | ||||||||||||||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
15481584 |
tccaaaatttaagtctccacaacttgaaaatcccagtatgcaaattttttaagaagattccagctgagatagtgatccaaatttagca |
15481671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 15446297 - 15446233
Alignment:
| Q |
43 |
cacagaaacagtaaaaaggtaaaattataagcagactctaaaaagctaacgacattaacttttta |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||| |
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| T |
15446297 |
cacagaaacagtaaaaaggtaaaattatatgcagactctaaaaagctaccagcattaacttttta |
15446233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 15427192 - 15427129
Alignment:
| Q |
44 |
acagaaacagtaaaaaggtaaaattataagcagactctaaaaagctaacgacattaacttttta |
107 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
15427192 |
acagaaacagtaaaaaggtaatattataagcagactctaaaaagctaccagcattaacttttta |
15427129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 15840910 - 15840958
Alignment:
| Q |
43 |
cacagaaacagtaaaaaggtaaaattataagcagactctaaaaagctaa |
91 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
15840910 |
cacagaaacagtaaaaagataaaattataagcagactctaaaaagctaa |
15840958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 15481531 - 15481578
Alignment:
| Q |
43 |
cacagaaacagtaaaaaggtaaaattataagcagactctaaaaagcta |
90 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15481531 |
cacaaaaacagtaaaaaggtaaaattataagcagactctaaaaagcta |
15481578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 15481448 - 15481483
Alignment:
| Q |
53 |
gtaaaaaggtaaaattataagcagactctaaaaagc |
88 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
15481448 |
gtaaaaaggtaaaattataagcagactctaaaaagc |
15481483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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