View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2538_low_18 (Length: 288)
Name: NF2538_low_18
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2538_low_18 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 65 - 248
Target Start/End: Complemental strand, 138956 - 138773
Alignment:
| Q |
65 |
cattgctgacaggttagcacaaattcttcctacaattatctcaaagaaccaaaaaggctttattcaaggaaggaatataaaagattgtctttgtttagcc |
164 |
Q |
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| T |
138956 |
cattgctgacaggttagcacaaattcttcctacaattatctcaaagaaccaaaaaggctttattcagggaaggaatataaaagattgtctttgtttagcc |
138857 |
T |
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| Q |
165 |
tctgaagctattaatcttctccataagaagtcatatgcagggaacattgctttgaaaattgatattaccaaagcctatgatact |
248 |
Q |
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| T |
138856 |
tcagaagctattaatcttctccataagaagtcatatgcagggaacattgctttgaaaattgatattaccaaagcctttgatact |
138773 |
T |
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Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 65 - 248
Target Start/End: Complemental strand, 3564873 - 3564690
Alignment:
| Q |
65 |
cattgctgacaggttagcacaaattcttcctacaattatctcaaagaaccaaaaaggctttattcaaggaaggaatataaaagattgtctttgtttagcc |
164 |
Q |
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| T |
3564873 |
cattgctgacaggttagcacaaattcttcctacaattatctcaaagaaccaaaaaggctttattcagggaaggaatataaaagattgtctttgtttagcc |
3564774 |
T |
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| Q |
165 |
tctgaagctattaatcttctccataagaagtcatatgcagggaacattgctttgaaaattgatattaccaaagcctatgatact |
248 |
Q |
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| T |
3564773 |
ttagaagctattaatcttctacataagaagtcatatgcagggaacattgctttgaaaaatgatattaccaaagcctttgatact |
3564690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 9750948 - 9750818
Alignment:
| Q |
108 |
aagaaccaaaaaggctttattcaaggaaggaatataaaagattgtctttgtttagcctctgaagctattaatcttctccataagaagtcatatgcaggga |
207 |
Q |
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| T |
9750948 |
aagaatcaaaaaggctttattcagggaagagatataaaagactgattttgtttagcttcagaagccataaaccatcttcataagaagacttatgcaggga |
9750849 |
T |
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| Q |
208 |
acattgctttgaaaattgatattaccaaagc |
238 |
Q |
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| T |
9750848 |
acatagttctgaaaattgtcattaccaaagc |
9750818 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 28714557 - 28714642
Alignment:
| Q |
87 |
attcttcctacaattatctcaaagaaccaaaaaggctttattcaaggaaggaatataaaagattgtctttgtttagcctctgaagc |
172 |
Q |
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| T |
28714557 |
attcttccaactattatctcaagcaatcaaaaaggtttcattaaaggaagaaatattaaggattgtctttgtcttgcttctgaagc |
28714642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 16488189 - 16488274
Alignment:
| Q |
87 |
attcttcctacaattatctcaaagaaccaaaaaggctttattcaaggaaggaatataaaagattgtctttgtttagcctctgaagc |
172 |
Q |
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|||||||| || |||||||||| || |||||||| || ||| ||||||| ||||| || |||||||||||| | || |||||||| |
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| T |
16488189 |
attcttccaactattatctcaagcaatcaaaaaggtttcattaaaggaagaaatattaaggattgtctttgtcttgcttctgaagc |
16488274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 13141330 - 13141246
Alignment:
| Q |
67 |
ttgctgacaggttagcacaaattcttcctacaattatctcaaagaaccaaaaaggctttattcaaggaaggaatataaaagattg |
151 |
Q |
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| T |
13141330 |
ttgctgataggttagcaaaaattcttcctagtatcatctcaaaagaacaaagaggttttgttcaaggcaggaacataagagattg |
13141246 |
T |
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