View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2538_low_19 (Length: 281)
Name: NF2538_low_19
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2538_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 40456571 - 40456794
Alignment:
| Q |
29 |
tctatgccataaccaaatttcctttttatttttatcttgtgtgaggtcactcgcaagatgagccaatgctcctttatgggtttgttgtgagacattttca |
128 |
Q |
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| T |
40456571 |
tctatgccataaccaaatttcctttttatttttatcttgtgtgaggtcactcgcaagatgagccaatgctcctttatgagtttgttgtgagacattttca |
40456670 |
T |
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| Q |
129 |
agataatacaaccctccgctgcatctaccactgccaatcttctccttggtatgtatgttctgnnnnnnncaatgggttggataaaacatagcaacacaag |
228 |
Q |
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| T |
40456671 |
agataatacaaccctccactgcgtctaccactgccaatcttctccttggtatgtatgttctgaaaaaaacaatgggttggataaaacatagcaacacaag |
40456770 |
T |
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| Q |
229 |
aatgtgatttggttaatttagtaa |
252 |
Q |
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| T |
40456771 |
aatgtgatttggttaatttagtaa |
40456794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 56392608 - 56392840
Alignment:
| Q |
15 |
agatgtcccaatcgtctatgccataaccaaatttcctttttatttttatcttgtgtgaggtcactcgcaagatgagccaatgctcctttatgggtttgtt |
114 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||| ||||||||||||| |
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| T |
56392608 |
agatgtcctgatcgtctatgccatagccaaatttcctttttatttttatcttgtatgtgatcacttgcaagatgagccaatgctccattatgggtttgtt |
56392707 |
T |
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| Q |
115 |
gtgagacattttcaagataatacaaccctccgctgcatctaccactgccaatcttctccttggtatgtatgttctgnnnnnnncaatgggttggataaaa |
214 |
Q |
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| T |
56392708 |
gtgaaacattttcaagataatacagtccttcactttctctaccactgccaatcttctccttggtatgtatattctgtaaaagacaatgagttggataaaa |
56392807 |
T |
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| Q |
215 |
catagcaacacaagaatgtgatttggttaattt |
247 |
Q |
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| T |
56392808 |
catagcaacacaagaatgtgatttaattaattt |
56392840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 27516858 - 27517081
Alignment:
| Q |
24 |
aatcgtctatgccataaccaaatttcctttttatttttatcttgtgtgaggtcactcgcaagatgagccaatgctcctttatgggtttgttgtgagacat |
123 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
27516858 |
aatcgtctatgccatagccaaatttcctttttatttttatcttgtatgtgatcacttgcaagatgagccaatgctccattatgggtttgttgtgaaacat |
27516957 |
T |
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| Q |
124 |
tttcaagataatacaaccctccgctgcatctaccactgccaatcttctccttggtatgtatgttctgnnnnnnncaatgggttggataaaacatagcaac |
223 |
Q |
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||||||||||||||| ||| | || ||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |
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| T |
27516958 |
tttcaagataatacagtccttcactttctctacaactgccaatcttctccttggtatgtatattctgtaaaagacaatgagttggataaaacatagcaac |
27517057 |
T |
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| Q |
224 |
acaagaatgtgatttggttaattt |
247 |
Q |
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||||||||||||||| ||||||| |
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| T |
27517058 |
acaagaatgtgatttaattaattt |
27517081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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