View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2538_low_2 (Length: 624)
Name: NF2538_low_2
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2538_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 79 - 547
Target Start/End: Complemental strand, 44769112 - 44768655
Alignment:
| Q |
79 |
tgatggttttctatggttctgtttattgtgctcttgtggatatgtatttcaagtgtattcattgtgaagatgcatgcaaagnnnnnnnnattttggtatt |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
44769112 |
tgatggttttctatggttctgtttattgtgctcttgtggatatgtatttcaagtgtattcattgtgaagatgcatgcaaagttttttt-attttgctatt |
44769014 |
T |
|
| Q |
179 |
gaaaagtacttatctgcatgtatatgtttcatttgaatcattttcaatttgttatttattgttacaggatgctgcaaagatgtacggtgctgtgttggca |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44769013 |
gaaaagtacttatctgcatgtatatgtttcatttgaatcattttcaatttgttatttattgttacaggatgctgcaaagatgtacggtgctgtgttggca |
44768914 |
T |
|
| Q |
279 |
tgtacggatgaagcagttcttcctgttagtcaagtgtttgatgcgattagagaacttgggaatgaaggggttgagaaattggatcctcttgtcatcacat |
378 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44768913 |
tgcacggatgaagcagttcttcctgttagtcaagtgtttgatgcgattagagaacttgggaatgaaggggttgagaaattggatcctcttgtcatcacat |
44768814 |
T |
|
| Q |
379 |
ctgcatcatcactcagtaattctacctctccttcaattattgtgcatattatattaatacgtgatgtgatgtgatacaatgaatttgcattaaannnnnn |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||| |||||||||||| |
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| T |
44768813 |
ctgcatcatcactcagtaattctacctctccttcaattattgggcatatta----------ttatgtgatgtgatataatggatttgcattaaatttttt |
44768724 |
T |
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| Q |
479 |
natagggtactttagtttgtaaatataaccagtaaaatacatgtttcttttgcttacatattcttcgac |
547 |
Q |
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| T |
44768723 |
tatggggtactttagtttgtaaatataaccagtaaaatacatgtttcttttgcttacatcttgttcgac |
44768655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 79 - 547
Target Start/End: Original strand, 28372367 - 28372824
Alignment:
| Q |
79 |
tgatggttttctatggttctgtttattgtgctcttgtggatatgtatttcaagtgtattcattgtgaagatgcatgcaaagnnnnnnnnattttggtatt |
178 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
28372367 |
tgatggttttctatggttctgtttattgtgctcttgtggatatgtatttcaagtgtattcattgcgaagatgcatgcaaagttttttt-attttggtatt |
28372465 |
T |
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| Q |
179 |
gaaaagtacttatctgcatgtatatgtttcatttgaatcattttcaatttgttatttattgttacaggatgctgcaaagatgtacggtgctgtgttggca |
278 |
Q |
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| T |
28372466 |
gaaaagtacttatctgcatgtatatgtttcatttgaatcattttcaatttgttatttattgttacaggatgctgcaaagatgtacggtgctgtgttggca |
28372565 |
T |
|
| Q |
279 |
tgtacggatgaagcagttcttcctgttagtcaagtgtttgatgcgattagagaacttgggaatgaaggggttgagaaattggatcctcttgtcatcacat |
378 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28372566 |
tgcacggatgaagcagttcttcctgttagtcaagtgtttgatgcgattagagaacttgggaatgaaggggttgagaaattggatcctcttgtcatcacat |
28372665 |
T |
|
| Q |
379 |
ctgcatcatcactcagtaattctacctctccttcaattattgtgcatattatattaatacgtgatgtgatgtgatacaatgaatttgcattaaannnnnn |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||| |||| |
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| T |
28372666 |
ctgcatcatcactcagtaattctacctctccttcaattattgtgcatatta-at---------atgtgatgtgatataatggatttgcaataaatttttt |
28372755 |
T |
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| Q |
479 |
natagggtactttagtttgtaaatataaccagtaaaatacatgtttcttttgcttacatattcttcgac |
547 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
28372756 |
tatggggtactttagtttgtaaatataaccagtaaaatacatgtttcttttgcttacatcttgttcgac |
28372824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 28199008 - 28199085
Alignment:
| Q |
82 |
tggttttctatggttctgtttattgtgctcttgtggatatgtatttcaagtgtattcattgtgaagatgcatgcaaag |
159 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||| |
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| T |
28199008 |
tggttttggatggttctgtttattgtgctcttgtggatatgtacttcaagtgtggttattgtgaagatgcgtgcaaag |
28199085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 35506483 - 35506552
Alignment:
| Q |
5 |
tgatcaataatgatcattgtgaattattattcttagcttcattttaatttacaattattccaaattatta |
74 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35506483 |
tgatcaataatgatcattgtgaattattattcttagcttcattttaatttacaattattccaaattatta |
35506552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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