View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2538_low_28 (Length: 251)

Name: NF2538_low_28
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2538_low_28
NF2538_low_28
[»] chr4 (5 HSPs)
chr4 (60-246)||(3221474-3221660)
chr4 (106-246)||(1362907-1363047)
chr4 (106-232)||(46625399-46625525)
chr4 (1-68)||(3220448-3220516)
chr4 (106-227)||(39249833-39249953)
[»] chr8 (2 HSPs)
chr8 (106-237)||(4533222-4533353)
chr8 (106-232)||(23665774-23665900)
[»] chr1 (3 HSPs)
chr1 (106-246)||(52842333-52842465)
chr1 (112-227)||(10531822-10531937)
chr1 (112-191)||(2902401-2902480)
[»] chr7 (2 HSPs)
chr7 (106-246)||(32885387-32885527)
chr7 (113-197)||(9563736-9563820)
[»] chr3 (1 HSPs)
chr3 (106-187)||(46616301-46616382)
[»] chr2 (2 HSPs)
chr2 (107-188)||(13543000-13543080)
chr2 (106-179)||(37088700-37088773)
[»] chr6 (2 HSPs)
chr6 (112-166)||(4334515-4334569)
chr6 (106-235)||(13493452-13493581)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 60 - 246
Target Start/End: Original strand, 3221474 - 3221660
Alignment:
Q  60 tactctcaatataggtaagtgtttgttttgctttacctcgtgttggtttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaa 159  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3221474 tactctcaatataggtaagtgttagttttgctttacctcgtgttggtttgtagctattttatggagtatttggcgtgcacgtaatgcttgtttatgggaa 3221573  T
Q  160 caaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggatactgttcaagatttcatgtggtgcaaccgtccctatgctact 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  3221574 caaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggatactgttcaagatttcatgtggtgcaaccgtcccaatgatact 3221660  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 106 - 246
Target Start/End: Original strand, 1362907 - 1363047
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||||||||| ||||||||||||| |||||| |||| | |||| |||||||||||||||||||||||||||||  || ||||||| ||||| |||||||    
T  1362907 tttgtagctatattatggagtatttggcgtgcgcgtagttcttgcttatgggaacaaaaaccagtcaatgcacacgcaacttgtgttctagcattggata 1363006  T
Q  206 ctgttcaagatttcatgtggtgcaaccgtccctatgctact 246  Q
    |||||  ||||||||||||||||||||||||| ||| ||||    
T  1363007 ctgttagagatttcatgtggtgcaaccgtcccaatgatact 1363047  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 46625525 - 46625399
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||||| ||| ||||||||||||| ||| || |||||||||||||||||||| | ||||||||||||| || |  ||||||||||  |||| |||||||    
T  46625525 tttgtagatatcttatggagtatttggcgcgcgcgtaatgcttgtttatgggagcgaaaaccagtcaattcaaactcatcttgtgtcatagcattggata 46625426  T
Q  206 ctgttcaagatttcatgtggtgcaacc 232  Q
     | ||| ||  |||| |||||||||||    
T  46625425 gtattcgaggcttcaagtggtgcaacc 46625399  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3220448 - 3220516
Alignment:
Q  1 acactcttcgatgccgaatgggnnnnnnn-tccataaccaaagaaaagaaaaattggtattactctcaa 68  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  3220448 acactcttcgatgccgaatgggaaaaaaaatccataaccaaagaaaagaaaaattggtattactctcaa 3220516  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 39249833 - 39249953
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||| ||||||||||| ||||||| |||||| |||||||||||||||| ||| ||||||   |||||||  ||  |||||||||| |||||  ||||||    
T  39249833 tttgtcgctattttatgaagtatttggcgtgcgcgtaatgcttgtttat-ggagcaaaaatttgtcaatgttcatgcatcttgtgttctagccctggata 39249931  T
Q  206 ctgttcaagatttcatgtggtg 227  Q
    | ||||  |||| |||||||||    
T  39249932 cagttcgcgattacatgtggtg 39249953  T

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Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 106 - 237
Target Start/End: Original strand, 4533222 - 4533353
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||||||||| ||||||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||||  |||||||||| ||||| |||||||    
T  4533222 tttgtagctatattatggagtatttggcgtgcgcgtattgcttgcttatgggaacaaaaaccagtcaatgcacacgcatcttgtgttctagcattggata 4533321  T
Q  206 ctgttcaagatttcatgtggtgcaaccgtccc 237  Q
    ||||||||||||||||||||||||||||||||    
T  4533322 ctgttcaagatttcatgtggtgcaaccgtccc 4533353  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 23665900 - 23665774
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||||||||| ||||||||||||| | |||| ||||||||||  ||||||||||||||||| ||||||||||| ||| ||||||| ||||  |||| ||    
T  23665900 tttgtagctatattatggagtatttggagtgcgcgtaatgctttcttatgggaacaaaaacccgtcaatgcacacacaacttgtgttctagtattggtta 23665801  T
Q  206 ctgttcaagatttcatgtggtgcaacc 232  Q
    |||||| ||||||||||||||||||||    
T  23665800 ctgttcgagatttcatgtggtgcaacc 23665774  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 52842465 - 52842333
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||||||||| ||| ||||||||| | ||||     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||   | |||    
T  52842465 tttgtagctatattaaggagtatttggtgtgc-----atgcttgtttatgggaacaaaaaccagtcaatgcacaagcatcttgtgtgctagc---gaata 52842374  T
Q  206 ctgttcaagatttcatgtggtgcaaccgtccctatgctact 246  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  52842373 ctgttcaagatttcatgtggtgcaaccgtcccaatgatact 52842333  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 227
Target Start/End: Complemental strand, 10531937 - 10531822
Alignment:
Q  112 gctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggatactgttc 211  Q
    ||||||| ||||||||||| ||| || |||||||||||||||||||| |||||||| |||||||||||  ||| |||||| |||||  | ||||| ||||    
T  10531937 gctatttcatggagtatttggcgcgcgcgtaatgcttgtttatgggagcaaaaacctgtcaatgcacatgcattttgtgtcctagcccttgatacggttc 10531838  T
Q  212 aagatttcatgtggtg 227  Q
     ||||| |||||||||    
T  10531837 gagattacatgtggtg 10531822  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 2902401 - 2902480
Alignment:
Q  112 gctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgt 191  Q
    |||||||||| |||||| | ||| |||||||||| |||||||||||| |||||  | |||||||||||  ||||||||||    
T  2902401 gctattttattgagtatatggcgcgcacgtaatggttgtttatgggagcaaaattctgtcaatgcacatgcatcttgtgt 2902480  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 32885527 - 32885387
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||||||||| ||||||| | ||| || ||| |||||| |||| || | |||||||||||||| ||||||||| | ||||||||| ||||| |||||||    
T  32885527 tttgtagctatattatggaattttttgcctgcgcgtaattcttgcttttaggaacaaaaaccagccaatgcacacatatcttgtgttctagcattggata 32885428  T
Q  206 ctgttcaagatttcatgtggtgcaaccgtccctatgctact 246  Q
     ||||| ||||||||||| ||||||||||||| ||| ||||    
T  32885427 ttgttcgagatttcatgtcgtgcaaccgtcccaatgatact 32885387  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 9563736 - 9563820
Alignment:
Q  113 ctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagc 197  Q
    ||||||||| |||||||| ||| || |||||||||||||||||||| |||||||| |||||||||||  |||||||||| |||||    
T  9563736 ctattttatagagtatttggcgcgcgcgtaatgcttgtttatgggagcaaaaacctgtcaatgcacatgcatcttgtgtcctagc 9563820  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 46616382 - 46616301
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatctt 187  Q
    ||||||||||| ||||||||||||| ||| || ||||||||||||||||||||  ||||||||||||||||| | |||||||    
T  46616382 tttgtagctatcttatggagtattttgcgagcgcgtaatgcttgtttatgggagaaaaaaccagtcaatgcaaacacatctt 46616301  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 13543000 - 13543080
Alignment:
Q  107 ttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttg 188  Q
    |||||||||||| || |||| ||| || ||||||||||||||||||||||||  ||||||  ||| ||||||| ||||||||    
T  13543000 ttgtagctattt-attgagtgtttggcatgcacgtaatgcttgtttatgggaggaaaaacttgtcgatgcacatacatcttg 13543080  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 37088700 - 37088773
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcaca 179  Q
    ||||||| ||||||||||||||||| | | |  || ||||| ||||||||||| |||||||  |||||||||||    
T  37088700 tttgtaggtattttatggagtatttggtgcgagcgcaatgcatgtttatgggagcaaaaacttgtcaatgcaca 37088773  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 4334515 - 4334569
Alignment:
Q  112 gctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaac 166  Q
    ||||||||||||||||||| |||| ||||  |||||||||||||| ||| |||||    
T  4334515 gctattttatggagtatttggcgttcacgcgatgcttgtttatggaaacgaaaac 4334569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 13493452 - 13493581
Alignment:
Q  106 tttgtagctattttatggagtatttagcgtgcacgtaatgcttgtttatgggaacaaaaaccagtcaatgcacaaacatcttgtgtgctagcgttggata 205  Q
    ||||| |||||||| |||||||||| |||  | |||||||| || |||||| ||||||||   || |||||  ||| ||||| |||  |||| || ||||    
T  13493452 tttgtggctattttgtggagtatttggcgcactcgtaatgcatgcttatggaaacaaaaatttgttaatgctaaaatatcttatgttttagctttagata 13493551  T
Q  206 ctgttcaagatttcatgtggtgcaaccgtc 235  Q
    | |||| |||||  ||||||||||||||||    
T  13493552 cggttcgagattatatgtggtgcaaccgtc 13493581  T

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