View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2538_low_3 (Length: 444)
Name: NF2538_low_3
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2538_low_3 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 40 - 433
Target Start/End: Original strand, 44949314 - 44949707
Alignment:
| Q |
40 |
atctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccact |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949314 |
atctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccact |
44949413 |
T |
|
| Q |
140 |
ccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcact |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44949414 |
ccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccgtatcaagcttcccatcact |
44949513 |
T |
|
| Q |
240 |
ataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccata |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44949514 |
ataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatcttcgttttgaatgttaggaacttcctttaccata |
44949613 |
T |
|
| Q |
340 |
ctatacttttctacaagtgcctttagggatttattcaacacagtagtaggaaggtttatttctctattcatgtctctttacgagattcctctgt |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949614 |
ctatacttttctacaagtgcctttagggatttattcaacacagtagtaggaaggtttatttctctattcatgtctctttacgagattcctctgt |
44949707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 48 - 249
Target Start/End: Original strand, 44943533 - 44943734
Alignment:
| Q |
48 |
gatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacat |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |
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| T |
44943533 |
gatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagaattgaagattccactctttttaatccactccaaacat |
44943632 |
T |
|
| Q |
148 |
ccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaat |
247 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||| ||| || ||||||| |||||||||| |||||||| |
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| T |
44943633 |
ccattacatgtggaaactttctgcatgaaaatgcatttcaagtacacattctttagagtatctatcaaaaccgtatcaagtttcccatcaccataaaaat |
44943732 |
T |
|
| Q |
248 |
gc |
249 |
Q |
| |
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|| |
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| T |
44943733 |
gc |
44943734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 40 - 341
Target Start/End: Original strand, 6470163 - 6470464
Alignment:
| Q |
40 |
atctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccact |
139 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||| ||| |||||| | ||| |||||| ||||| |
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| T |
6470163 |
atctgcattatctcatcatctaaaaccaaagtttgtaaaatctcttctatttgttctcccgtgacttgagttgtgaagaccccactccttttaacccact |
6470262 |
T |
|
| Q |
140 |
ccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcact |
239 |
Q |
| |
|
|||||||||||||||||||||||||| | | || ||||||||| || |||| | ||||||||| ||||||||| || ||||||| |||| ||||| |
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| T |
6470263 |
ccaaacatccatcacatgtggaaactctctccaatgaaatgcattgcaggcacgtttgctttagagcgtctataaaaaccgtatcaagactcccttcact |
6470362 |
T |
|
| Q |
240 |
ataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccata |
339 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||||| ||||||||| |||| ||||| ||||||||||||| |
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| T |
6470363 |
gtaaaaatgcccaccagttatatccttcgaaggctcaaattctgttcccatgtagatctttatacctttgtttttaatggaaggaagttcctttaccata |
6470462 |
T |
|
| Q |
340 |
ct |
341 |
Q |
| |
|
|| |
|
|
| T |
6470463 |
ct |
6470464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 44943742 - 44943804
Alignment:
| Q |
297 |
ctttatatctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
359 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44943742 |
ctttatacctttgttttgaatgttaggaacttcctttaccatactatacttttctacaagtgc |
44943804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 40 - 341
Target Start/End: Complemental strand, 419521 - 419220
Alignment:
| Q |
40 |
atctgcatgatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccact |
139 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||| ||||||| ||| |||||| | |||||||||| ||||| |
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| T |
419521 |
atctgcatgatctcatcgtctaaaaccaaagtttgcaaaatctcttctatttggtctcccgtgacttgagttgtgaagaccccactctttttaacccact |
419422 |
T |
|
| Q |
140 |
ccaaacatccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcact |
239 |
Q |
| |
|
|||||||||||||||||||||||||| | || | ||||||||| ||||||| ||||||||||||||||||||| || ||||||| |||| || || |
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| T |
419421 |
ccaaacatccatcacatgtggaaactctctgtaatgaaatgcattgcaagcacgttttctttagagcatctataaaaaccgtatcaagactcccttcgct |
419322 |
T |
|
| Q |
240 |
ataaaaatgcccaccagtgatatcctctgaaggctcaagttctgctgccatgtagtgctttatatctttgttttgaatgttaggaacttcctttaccata |
339 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||| ||||| | |||||||| ||||||| ||||||||| |||| ||||| ||||||||||||| |
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| T |
419321 |
gtaaaaatgcccaccagttatatccttcgaaggctcaaattctgttcccatgtagatctttatacctttgtttttaatggaaggaagttcctttaccata |
419222 |
T |
|
| Q |
340 |
ct |
341 |
Q |
| |
|
|| |
|
|
| T |
419221 |
ct |
419220 |
T |
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