View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2538_low_30 (Length: 240)
Name: NF2538_low_30
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2538_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 44953499 - 44953379
Alignment:
| Q |
1 |
ttgcatttaaagtgacattgtagtgttattattctaaattaaagtctgtgattgtttagctttctaagtgaatatgtgactatattatgttgatgtgaat |
100 |
Q |
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| T |
44953499 |
ttgcatttaaagtgacattgtagtgttattattctaaattaaagtatgtgattgtttagctttctaagtgaatatgtgactatattatgttgatgtgaat |
44953400 |
T |
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| Q |
101 |
tatttaagtgtaatttacata |
121 |
Q |
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| T |
44953399 |
tctttaagtgtaatttacata |
44953379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 44952647 - 44952526
Alignment:
| Q |
113 |
atttacatatttgaagtaaagtatcatctgtatgaaaatgtatgtgcgtcgagtcgtgtccaagtgagacgttatctaatctcgagcatgttataacact |
212 |
Q |
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||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44952647 |
atttacatatttgaagtaaagtatcatctttgtcaaaatgtatgtgcgtcgagtcgtgtccaagtgagacgttatctaatctcgagcatgttataacact |
44952548 |
T |
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| Q |
213 |
atacatatattagaataatcta |
234 |
Q |
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| T |
44952547 |
atacatatattagaatagtcta |
44952526 |
T |
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