View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2538_low_4 (Length: 439)
Name: NF2538_low_4
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2538_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 29 - 426
Target Start/End: Complemental strand, 51909869 - 51909472
Alignment:
| Q |
29 |
aggcacaagtaacaatagtaatggtaagtgacaaagaagaagcggcaaataaggttggttaggttaggtgtgaattctcaatacttatgaaatgaaatga |
128 |
Q |
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| T |
51909869 |
aggcacaagtaacaatagtaatggtaagtgacaaagaagaagcggcaaataaggttggttaggttaggtgtgaattctcaatacttatgaaatgaaatga |
51909770 |
T |
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| Q |
129 |
ctactgtcacagaggcagtaaataccctctgacaacaagggataattaactaacactcacaaacccctaagtaaataaatacaccaaacatatgtttggt |
228 |
Q |
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| T |
51909769 |
ctactgtcacagaggcagtaaataccctctgacaacaagggataattaactaacacccacaaacccctaagtaaataaatacaccaaacatatgtttgat |
51909670 |
T |
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| Q |
229 |
tttactatgggtgtgtcagaatcatattgatctttcatttgattttataggatgtcagaattattgttatcctttgtttagttttaagtatttaacaaac |
328 |
Q |
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| T |
51909669 |
tttaccgtgggtgtgtcagaatcatattgatctttcgttggattttatagtgtatcacaatcattgttatcctttgtttagttttaagtttttaacaaac |
51909570 |
T |
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| Q |
329 |
ttgacggatcaaacatgattttgacacacccatatcatatcaaacataatacaccaaatttcaaactcttgtgcaatatagttacaccggtggtatat |
426 |
Q |
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|||| ||||| |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| | ||||||||| |
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| T |
51909569 |
ttgatagatcatacatgattttaacacacacatatcatatcaaacataatataccaaatttcaaactcgtgtgcaatatagttacatcagtggtatat |
51909472 |
T |
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