View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2538_low_8 (Length: 329)
Name: NF2538_low_8
Description: NF2538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2538_low_8 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 6448076 - 6447944
Alignment:
| Q |
108 |
tctttatcaattctttgatccttgattcaaatggattagtaagagttggaatgaagttgaaaatattgctagtagaaggttgagattcggccttcagctt |
207 |
Q |
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|||||| ||| ||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6448076 |
tctttagcaagtctttgatcctagattcaaatggattggcaagagttggaatgaagttgaaaatattgctagtagaaggttgagattcggccttcagctt |
6447977 |
T |
|
| Q |
208 |
cttcagtggtgcatcagttgcaatctcatctaa |
240 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
6447976 |
cttcactggtgcatcagttgcaatctcatctaa |
6447944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 115 - 296
Target Start/End: Original strand, 5250911 - 5251092
Alignment:
| Q |
115 |
caattctttgatccttgattcaaatggattagtaagagttggaatgaagttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcagt |
214 |
Q |
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||||||||| ||||| ||||||||||||||||| | || || || ||||| ||| | ||||||||||||||||||||||| || ||||||||||||||| |
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| T |
5250911 |
caattctttaatcctagattcaaatggattagtgaaagatgaaaagaagtcgaataccttgctagtagaaggttgagattcagctttcagcttcttcagt |
5251010 |
T |
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| Q |
215 |
ggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcacgt |
296 |
Q |
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|||||||||||||||||||||||||| |||||| || ||||||| | |||||| | |||| |||||||||||||||||| |
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| T |
5251011 |
ggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgt |
5251092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 115 - 296
Target Start/End: Original strand, 5268798 - 5268979
Alignment:
| Q |
115 |
caattctttgatccttgattcaaatggattagtaagagttggaatgaagttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcagt |
214 |
Q |
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||||||||||||||| || |||||||||||||| | || | |||||||| ||| | ||||||||||||||||||||||| ||| ||||||||| | |
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| T |
5268798 |
caattctttgatcctagactcaaatggattagtgaaagacgaaatgaagtcgaataccttgctagtagaaggttgagattcaagtttctgcttcttcaat |
5268897 |
T |
|
| Q |
215 |
ggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcacgt |
296 |
Q |
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|||| ||||||||||||||||||||| |||||| || ||||||| | |||||| | |||| |||||||||||||||||| |
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| T |
5268898 |
ggtgtatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgt |
5268979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 295
Target Start/End: Complemental strand, 4388224 - 4388050
Alignment:
| Q |
115 |
caattctttgatccttgattcaaatggattagtaagagttggaatgaagttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcagt |
214 |
Q |
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||||||||||||||| ||||||||||||||| | | || || || ||||||||| | |||||||||||||||| | ||| || ||||||||| | |
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| T |
4388224 |
caattctttgatcctagattcaaatggattaatgaaagatgaaaagaagttgaataccttgctagtagaaggttcaaatt------tctgcttcttcaat |
4388131 |
T |
|
| Q |
215 |
ggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcacg |
295 |
Q |
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|||||||||||||||||||||||||| |||||| || ||||||| | |||||| | |||| ||||||||||||||||| |
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| T |
4388130 |
ggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcattatgtttaagatcatcaagccacttcttcacg |
4388050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 296
Target Start/End: Original strand, 5299473 - 5299654
Alignment:
| Q |
115 |
caattctttgatccttgattcaaatggattagtaagagttggaatgaagttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcagt |
214 |
Q |
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||||||||||||||| || ||||| |||| |||| | || || ||||| ||| | |||||||||||||||||||| || | ||||||||||| | |
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| T |
5299473 |
caattctttgatcctagactcaaagggatcagtacacgatgaaaagaagtcgaataccttgctagtagaaggttgagaatcaactttcagcttcttgttt |
5299572 |
T |
|
| Q |
215 |
ggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcacgt |
296 |
Q |
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|||| | |||||||||||||| || || || | || ||||||| | ||||||| | ||||||||||||||||||||||| |
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| T |
5299573 |
ggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgt |
5299654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 5281481 - 5281572
Alignment:
| Q |
200 |
ttcagcttcttcagtggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttctt |
291 |
Q |
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|||||||| |||||| |||| ||||| ||||||||||| || | ||| | |||||||| | ||||||||| | |||| ||||||||||||| |
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| T |
5281481 |
ttcagcttattcagttgtgcgtcagtagcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagccacttctt |
5281572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 6453967 - 6453921
Alignment:
| Q |
137 |
aatggattagtaagagttggaatgaagttgaaaatattgctagtaga |
183 |
Q |
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||||||||||||| || | |||||||||||||||||||| ||||||| |
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| T |
6453967 |
aatggattagtaaaaggtagaatgaagttgaaaatattgatagtaga |
6453921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 6762386 - 6762432
Alignment:
| Q |
137 |
aatggattagtaagagttggaatgaagttgaaaatattgctagtaga |
183 |
Q |
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||||||||||||| || | |||||||||||||||||||| ||||||| |
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| T |
6762386 |
aatggattagtaaaaggtagaatgaagttgaaaatattgatagtaga |
6762432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 6553620 - 6553543
Alignment:
| Q |
217 |
tgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcac |
294 |
Q |
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| T |
6553620 |
tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcac |
6553543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 8455501 - 8455578
Alignment:
| Q |
217 |
tgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcac |
294 |
Q |
| |
|
||||||||| | ||||||||||||||| ||| | || ||||| | | ||||||| | |||| |||||||||||||||| |
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| T |
8455501 |
tgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcac |
8455578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 6659 - 6582
Alignment:
| Q |
217 |
tgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcac |
294 |
Q |
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||||||||| | ||||||||||||||| ||| | |||||||| | | ||||||| | ||| |||||||||||||||| |
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| T |
6659 |
tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcac |
6582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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