View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2539_high_9 (Length: 218)

Name: NF2539_high_9
Description: NF2539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2539_high_9
NF2539_high_9
[»] chr4 (20 HSPs)
chr4 (1-201)||(48705225-48705420)
chr4 (112-201)||(45366183-45366267)
chr4 (105-161)||(48735352-48735408)
chr4 (109-165)||(45384842-45384898)
chr4 (106-147)||(48852753-48852794)
chr4 (12-52)||(48852851-48852891)
chr4 (25-57)||(48870713-48870745)
chr4 (1-57)||(48876017-48876073)
chr4 (25-57)||(48886399-48886431)
chr4 (27-78)||(48898872-48898923)
chr4 (13-64)||(50250626-50250677)
chr4 (108-155)||(50669134-50669181)
chr4 (1-66)||(48735245-48735310)
chr4 (106-147)||(48891499-48891540)
chr4 (1-58)||(48903119-48903176)
chr4 (106-147)||(49044140-49044181)
chr4 (106-147)||(49048526-49048567)
chr4 (106-146)||(7773776-7773816)
chr4 (106-146)||(7877816-7877856)
chr4 (106-146)||(7908407-7908447)
[»] chr5 (1 HSPs)
chr5 (106-143)||(179122-179159)
[»] chr3 (4 HSPs)
chr3 (105-146)||(11005893-11005934)
chr3 (105-146)||(11015456-11015497)
chr3 (105-146)||(11024468-11024509)
chr3 (105-157)||(47451859-47451911)
[»] chr6 (1 HSPs)
chr6 (13-52)||(21015994-21016033)
[»] chr8 (1 HSPs)
chr8 (27-57)||(15349039-15349069)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 48705225 - 48705420
Alignment:
Q  1 aacatcctttcgtaaatcatgacaataagccaaccaatgaatagccccattatagagcacccctgcattgggcttatcttcacatggattcgtataaggg 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48705225 aacatcctttcgtaaatcatgacgataagccaaccaatgaatagccccattatagagcacccctgcattgggcttatcttcacatgaattcgtataaggg 48705324  T
Q  101 aagaactcaatttctttccatgtattaactctcaatgagaaaaactcaaagtttgatggatcaacgtaacggacgttgaaacaaccaaataatcatctgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     ||||||| ||||||||||||| |||||||||||    
T  48705325 aagaactcaatttctttccatgtattaactctcaatgagaaaaactcaaagtgtgatggatc-----aacggacattgaaacaaccaagtaatcatctgt 48705419  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 45366183 - 45366267
Alignment:
Q  112 ttctttccatgtattaactctcaatgagaaaaactcaaagtttgatggatcaacgtaacggacgttgaaacaaccaaataatcatctgtt 201  Q
    |||||||||||||||| ||||||||||||||| ||| |||| |||||||||     ||||||| ||||||||||||||||||||||||||    
T  45366183 ttctttccatgtattagctctcaatgagaaaatctccaagtgtgatggatc-----aacggacattgaaacaaccaaataatcatctgtt 45366267  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 48735352 - 48735408
Alignment:
Q  105 actcaatttctttccatgtattaactctcaatgagaaaaactcaaagtttgatggat 161  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||    
T  48735352 actcaatttctttccaggtattagctctcaatgagaaaaactcaaagtgtaatggat 48735408  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 45384842 - 45384898
Alignment:
Q  109 aatttctttccatgtattaactctcaatgagaaaaactcaaagtttgatggatcaac 165  Q
    |||||||||||||| |||| ||||||| ||||||||||| |||| ||||||||||||    
T  45384842 aatttctttccatgcattagctctcaacgagaaaaactccaagtgtgatggatcaac 45384898  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 48852794 - 48852753
Alignment:
Q  106 ctcaatttctttccatgtattaactctcaatgagaaaaactc 147  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  48852794 ctcaatttctttccatgcattagctctcaatgagaaaaactc 48852753  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 48852891 - 48852851
Alignment:
Q  12 gtaaatcatgacaataagccaaccaatgaatagccccatta 52  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  48852891 gtaaatcatgacgaaaagccaaccaatgaatagccccatta 48852851  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 48870745 - 48870713
Alignment:
Q  25 ataagccaaccaatgaatagccccattatagag 57  Q
    |||||||||||||||||||||||||||||||||    
T  48870745 ataagccaaccaatgaatagccccattatagag 48870713  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 48876073 - 48876017
Alignment:
Q  1 aacatcctttcgtaaatcatgacaataagccaaccaatgaatagccccattatagag 57  Q
    ||||| |||| ||||||||| || |||||||||||||||||||||||| | ||||||    
T  48876073 aacattcttttgtaaatcatcacgataagccaaccaatgaatagccccgtgatagag 48876017  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 48886431 - 48886399
Alignment:
Q  25 ataagccaaccaatgaatagccccattatagag 57  Q
    |||||||||||||||||||||||||||||||||    
T  48886431 ataagccaaccaatgaatagccccattatagag 48886399  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 48898923 - 48898872
Alignment:
Q  27 aagccaaccaatgaatagccccattatagagcacccctgcattgggcttatc 78  Q
    |||||||||||||||||||||||||||||||   |||||||| ||| |||||    
T  48898923 aagccaaccaatgaatagccccattatagagtgaccctgcatggggattatc 48898872  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 50250626 - 50250677
Alignment:
Q  13 taaatcatgacaataagccaaccaatgaatagccccattatagagcacccct 64  Q
    |||||||| || | |||||||||||||||||||||||||| |||| ||||||    
T  50250626 taaatcataacgaaaagccaaccaatgaatagccccattaaagagaacccct 50250677  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 50669181 - 50669134
Alignment:
Q  108 caatttctttccatgtattaactctcaatgagaaaaactcaaagtttg 155  Q
    |||||| ||||||||||||| |||||| ||||||||||||||| ||||    
T  50669181 caatttgtttccatgtattatctctcactgagaaaaactcaaaatttg 50669134  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 48735245 - 48735310
Alignment:
Q  1 aacatcctttcgtaaatcatgacaataagccaaccaatgaatagccccattatagagcacccctgc 66  Q
    |||| |||| ||||||||||||  ||||||||||||||||||| |  ||||| |||||| ||||||    
T  48735245 aacacccttacgtaaatcatgatgataagccaaccaatgaataccatcattaaagagcaaccctgc 48735310  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 48891540 - 48891499
Alignment:
Q  106 ctcaatttctttccatgtattaactctcaatgagaaaaactc 147  Q
    |||||||||||||||  ||||| |||||||||||||||||||    
T  48891540 ctcaatttctttccacatattatctctcaatgagaaaaactc 48891499  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 48903176 - 48903119
Alignment:
Q  1 aacatcctttcgtaaatcatgacaataagccaaccaatgaatagccccattatagagc 58  Q
    ||||| ||||| ||||||||||  | |||||||| ||||||||||||||||| |||||    
T  48903176 aacattctttcttaaatcatgatgaaaagccaactaatgaatagccccattaaagagc 48903119  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 49044140 - 49044181
Alignment:
Q  106 ctcaatttctttccatgtattaactctcaatgagaaaaactc 147  Q
    ||||||||| |||||| ||||| |||||||||||||||||||    
T  49044140 ctcaatttcattccatctattatctctcaatgagaaaaactc 49044181  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 49048526 - 49048567
Alignment:
Q  106 ctcaatttctttccatgtattaactctcaatgagaaaaactc 147  Q
    |||||||||||||||| ||||| ||||||| |||||||||||    
T  49048526 ctcaatttctttccatatattatctctcaacgagaaaaactc 49048567  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 7773776 - 7773816
Alignment:
Q  106 ctcaatttctttccatgtattaactctcaatgagaaaaact 146  Q
    |||| ||||||||||||||||| |||| |||||||||||||    
T  7773776 ctcagtttctttccatgtattatctctaaatgagaaaaact 7773816  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 7877856 - 7877816
Alignment:
Q  106 ctcaatttctttccatgtattaactctcaatgagaaaaact 146  Q
    |||| ||||||||||||||||| |||| |||||||||||||    
T  7877856 ctcagtttctttccatgtattatctctaaatgagaaaaact 7877816  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 7908447 - 7908407
Alignment:
Q  106 ctcaatttctttccatgtattaactctcaatgagaaaaact 146  Q
    |||||||||||||||||||||| |||| | |||||||||||    
T  7908447 ctcaatttctttccatgtattatctctaactgagaaaaact 7908407  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 179159 - 179122
Alignment:
Q  106 ctcaatttctttccatgtattaactctcaatgagaaaa 143  Q
    |||||||||||||||||||||| |||||||||||||||    
T  179159 ctcaatttctttccatgtattatctctcaatgagaaaa 179122  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 11005893 - 11005934
Alignment:
Q  105 actcaatttctttccatgtattaactctcaatgagaaaaact 146  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  11005893 actcaatttctttccatgtattcgctctcaatgagaaaaact 11005934  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 11015456 - 11015497
Alignment:
Q  105 actcaatttctttccatgtattaactctcaatgagaaaaact 146  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  11015456 actcaatttcgttccatgtattagctctcaatgagaaaaact 11015497  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 11024468 - 11024509
Alignment:
Q  105 actcaatttctttccatgtattaactctcaatgagaaaaact 146  Q
    |||||||||| |||||||||||| ||||||| ||||||||||    
T  11024468 actcaatttcgttccatgtattagctctcaaagagaaaaact 11024509  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 47451859 - 47451911
Alignment:
Q  105 actcaatttctttccatgtattaactctcaatgagaaaaactcaaagtttgat 157  Q
    |||||||||||||||||| |||| ||||||| || |||||||| |||| ||||    
T  47451859 actcaatttctttccatgcattagctctcaacgaaaaaaactctaagtgtgat 47451911  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 21016033 - 21015994
Alignment:
Q  13 taaatcatgacaataagccaaccaatgaatagccccatta 52  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  21016033 taaatcatgacgaaaagccaaccaatgaatagccccatta 21015994  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 15349069 - 15349039
Alignment:
Q  27 aagccaaccaatgaatagccccattatagag 57  Q
    |||||||||||||||||||||||||||||||    
T  15349069 aagccaaccaatgaatagccccattatagag 15349039  T

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