View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2539_low_1 (Length: 647)

Name: NF2539_low_1
Description: NF2539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2539_low_1
NF2539_low_1
[»] chr4 (58 HSPs)
chr4 (425-624)||(48734899-48735098)
chr4 (48-170)||(48864877-48864999)
chr4 (54-247)||(45371122-45371326)
chr4 (19-122)||(48734453-48734556)
chr4 (464-636)||(49038411-49038577)
chr4 (49-164)||(48871500-48871616)
chr4 (49-164)||(48876804-48876920)
chr4 (70-215)||(48146910-48147066)
chr4 (177-255)||(48853459-48853537)
chr4 (326-414)||(48734767-48734855)
chr4 (229-396)||(48864686-48864846)
chr4 (74-233)||(48155562-48155730)
chr4 (453-636)||(48147235-48147412)
chr4 (49-164)||(48887186-48887302)
chr4 (501-636)||(45365784-45365919)
chr4 (501-636)||(45371638-45371773)
chr4 (570-636)||(7790442-7790508)
chr4 (462-636)||(48870922-48871096)
chr4 (462-636)||(48876226-48876400)
chr4 (584-636)||(7878745-7878797)
chr4 (584-636)||(7908664-7908716)
chr4 (584-636)||(48156076-48156128)
chr4 (66-118)||(48160479-48160531)
chr4 (453-636)||(48853043-48853226)
chr4 (21-124)||(49043325-49043427)
chr4 (462-636)||(48886608-48886782)
chr4 (450-636)||(49043681-49043867)
chr4 (450-636)||(49048068-49048254)
chr4 (66-163)||(47208773-47208870)
chr4 (97-233)||(48170187-48170334)
chr4 (177-241)||(7772965-7773029)
chr4 (171-262)||(48899526-48899618)
chr4 (584-636)||(50666677-50666729)
chr4 (589-636)||(48864397-48864444)
chr4 (570-636)||(48903317-48903383)
chr4 (584-633)||(7771760-7771809)
chr4 (168-245)||(49040378-49040455)
chr4 (588-636)||(7773476-7773524)
chr4 (584-636)||(7800999-7801051)
chr4 (584-636)||(7813839-7813891)
chr4 (76-152)||(43595969-43596045)
chr4 (181-261)||(48871388-48871468)
chr4 (181-261)||(48876692-48876772)
chr4 (169-243)||(45365269-45365343)
chr4 (501-531)||(45384454-45384484)
chr4 (181-259)||(48887076-48887154)
chr4 (281-347)||(49106107-49106173)
chr4 (584-633)||(7237390-7237439)
chr4 (179-244)||(7787475-7787540)
chr4 (177-258)||(48889457-48889538)
chr4 (584-636)||(7786826-7786878)
chr4 (186-246)||(37826188-37826248)
chr4 (169-261)||(45384080-45384171)
chr4 (592-636)||(45384547-45384591)
chr4 (588-636)||(47208239-47208287)
chr4 (175-215)||(47208710-47208750)
chr4 (469-549)||(48899189-48899269)
chr4 (198-250)||(49058046-49058097)
[»] chr8 (3 HSPs)
chr8 (440-549)||(4030291-4030400)
chr8 (49-138)||(15349806-15349896)
chr8 (190-360)||(4029986-4030160)
[»] chr5 (8 HSPs)
chr5 (59-155)||(29697149-29697246)
chr5 (59-258)||(29688921-29689130)
chr5 (59-117)||(29711593-29711651)
chr5 (589-632)||(42561985-42562028)
chr5 (594-636)||(179420-179462)
chr5 (570-636)||(9120125-9120191)
chr5 (58-124)||(9120673-9120740)
chr5 (293-396)||(29696896-29697001)
[»] chr6 (4 HSPs)
chr6 (20-112)||(21017301-21017393)
chr6 (66-124)||(14197230-14197288)
chr6 (591-631)||(14197337-14197377)
chr6 (584-636)||(21016183-21016235)
[»] chr3 (5 HSPs)
chr3 (448-531)||(47451411-47451494)
chr3 (50-99)||(11004985-11005034)
chr3 (584-636)||(11024150-11024202)
chr3 (589-636)||(11005580-11005627)
chr3 (584-636)||(11015138-11015190)
[»] chr1 (8 HSPs)
chr1 (184-243)||(24381868-24381927)
chr1 (64-121)||(24368006-24368064)
chr1 (584-632)||(24416144-24416192)
chr1 (177-215)||(24341224-24341262)
chr1 (177-215)||(24353589-24353627)
chr1 (584-629)||(24323139-24323184)
chr1 (584-632)||(24310582-24310630)
chr1 (584-632)||(24367531-24367579)
[»] chr2 (3 HSPs)
chr2 (293-360)||(29351111-29351178)
chr2 (440-521)||(29350899-29350980)
chr2 (224-261)||(29351214-29351251)
[»] chr7 (2 HSPs)
chr7 (178-246)||(48884652-48884720)
chr7 (284-336)||(48884563-48884615)


Alignment Details
Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 58)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 425 - 624
Target Start/End: Original strand, 48734899 - 48735098
Alignment:
425 cttcaaattcgcatgaatagaagcgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgct 524  Q
    ||||||||||  | ||||||  ||||| ||||||||||||||||||||||| |||| ||| ||||||||| || |||||||||||||||||||||||  |    
48734899 cttcaaattcagaagaataggggcgatgctctagcagctgtcctttgtcattgtacctcaccaatccagtctcctgatctgttccaataatatcaccatt 48734998  T
525 ttttgtataacacaatggggaaaagctctcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatc 624  Q
    ||||||| |||| ||||||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||| |||| ||||||||| || ||||||    
48734999 ttttgtacaacaaaatggggaaaagctctcgttgggagtgccatcaacagacacagcatgagttttagtccaagacgaattcactttgtattctttcatc 48735098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 48864999 - 48864877
Alignment:
48 agtgtaattgtgattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaac 147  Q
    ||||||||||||||||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||| | | ||||||||||||||||||    
48864999 agtgtaattgtgattttgatcttgatcaacatgcaaacattcagcaaataaattacaatataaaacaatttcaagcagcaaacagaacatacattagaac 48864900  T
148 ccaatccagttgcacatacataa 170  Q
    ||||||||||| ||||| |||||    
48864899 ccaatccagttacacatgcataa 48864877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 45371122 - 45371326
Alignment:
54 attgtgattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatc 153  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| | ||  || || ||||||||||||||| |||||    
45371122 attgtgatcttgatcttgatcaacatgcataaattcataaaataaattacattataaaacaatttctaacagtgatcacaacatacattagaactcaatc 45371221  T
154 cagttgcacatacat-----------aatcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgaca 242  Q
    ||  | ||||| |||           ||||||| ||||| |||||||||  ||||||| || |||||||||||||||| | |||||||||||||||||||    
45371222 caactacacatgcataaataaaagtgaatcacacaaacagagttgtcaaagtttccaagaagcatattacaaacaattaatcaataaacatttcatgaca 45371321  T
243 tatta 247  Q
    |||||    
45371322 tatta 45371326  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 48734453 - 48734556
Alignment:
19 atttctaatgaagtgctttaaataagagaagtgtaattgtgattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaattt 118  Q
    |||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||| ||    
48734453 atttataatgaagtgctttgaataagagtagtgtaatggtgattttgatcttgatcaacatgcataaattcatcaaataaattacggtataaaacaaatt 48734552  T
119 caag 122  Q
    ||||    
48734553 caag 48734556  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 464 - 636
Target Start/End: Original strand, 49038411 - 49038577
Alignment:
464 gtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttgggagt 563  Q
    ||||||||||||| ||||||||||||| | | | |  ||||||||||||||||| ||| ||||||||| |||| |  |||||||||      | |||| |    
49038411 gtcctttgtcatcatacttcatcaatcgattataaccatctgttccaataatatgaccactttttgtacaacatataggggaaaag------tagggaat 49038504  T
564 gccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||| ||||||||||| || |||| ||||||||||| ||||| |||||||| || ||||||||||||||||||    
49038505 gccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttca 49038577  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 48871616 - 48871500
Alignment:
49 gtgtaattgtgattttgatcttgatcaacatgcataaattcatcaa-ctaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaac 147  Q
    ||||||||||||||||||||||| | |||||||| ||||| ||||| |||| |||| || |||||||||||||||||  ||||| ||||||||||||| |    
48871616 gtgtaattgtgattttgatcttgtttaacatgcaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagc 48871517  T
148 ccaatccagttgcacat 164  Q
     ||||||| || |||||    
48871516 tcaatccaattacacat 48871500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 48876920 - 48876804
Alignment:
49 gtgtaattgtgattttgatcttgatcaacatgcataaattcatcaa-ctaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaac 147  Q
    ||||||||||||||||||||||| | |||||||| ||||| ||||| |||| |||| || |||||||||||||||||  ||||| ||||||||||||| |    
48876920 gtgtaattgtgattttgatcttgtttaacatgcaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagc 48876821  T
148 ccaatccagttgcacat 164  Q
     ||||||| || |||||    
48876820 tcaatccaattacacat 48876804  T

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Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 48146910 - 48147066
Alignment:
70 tgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatccagttgcacatacat- 168  Q
    ||||||||||| | ||| |||| || |||||||||||||| |||||||||| |||  ||||| ||||||||||||||| |||||||||| ||||| |||     
48146910 tgatcaacatgtagaaactcataaaataaattacaatatagaacaatttcaggcagtgaccacaacatacattagaactcaatccagttacacatgcata 48147009  T
169 ----------aatcacaaaaacaaagttgtcaacatttccaataaacatattacaaa 215  Q
              ||||||  |||||||||||||||||||||||| ||||||| ||||||    
48147010 aataacactgaatcacgcaaacaaagttgtcaacatttccaagaaacatactacaaa 48147066  T

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Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 48853537 - 48853459
Alignment:
177 aaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagct 255  Q
    |||||||||||| |||||||||||| ||||||| ||| | |||||||||| ||||||||||||||||||||||| ||||    
48853537 aaacaaagttgtaaacatttccaattaacatatcacagataattgaccaacaaacatttcatgacatattacatcagct 48853459  T

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Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 326 - 414
Target Start/End: Original strand, 48734767 - 48734855
Alignment:
326 aagagttcatagtacagtataaatatcaagaaaatgaatggtgaagaagaatattccacaacctcattctttcttcttaggcttgttca 414  Q
    ||||||||||| | || ||||||||||||||||||| |||||||| ||||| ||| |||||||||||   |||||||||||||||||||    
48734767 aagagttcataatgcaatataaatatcaagaaaatggatggtgaaaaagaacatttcacaacctcatatcttcttcttaggcttgttca 48734855  T

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Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 229 - 396
Target Start/End: Complemental strand, 48864846 - 48864686
Alignment:
229 aacatttcatgacatattacattagctcatgtgatagtactgattcatgctatacaaatgcatgcaaacacatagtactctacagatgcagccactgaag 328  Q
    |||||||||  |||||||||||||||||||||| || |||||| ||||    |||||||||||  |||||||| |||| ||||| |||||| ||   |||    
48864846 aacatttcactacatattacattagctcatgtggta-tactgactcat--attacaaatgcatttaaacacatggtaccctacaaatgcagtcatccaag 48864750  T
329 agttcatagtacagtataaatatcaagaaaatgaatggtgaagaagaatattccacaacctcattctt 396  Q
    ||||||||  ||| |||||||||||||||    ||| |||||| |||||||| |||||||||||||||    
48864749 agttcataacacaatataaatatcaagaa----aatagtgaaggagaatatttcacaacctcattctt 48864686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 48155562 - 48155730
Alignment:
74 caacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatccagttgcacatacat----- 168  Q
    ||||||||||||| |||  || ||||||| || ||||||||||||||||||| ||||| ||||||||||||||| |||||||||  |||||  ||         
48155562 caacatgcataaactca--aaataaattaaaaaataaaacaatttcaagcaatgaccacaacatacattagaactcaatccagtgacacatgtataaata 48155659  T
169 ------aatcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacat 233  Q
          ||||||| |||||||| |||||||||  |||| ||||||| |||||| | |||||||||||||||    
48155660 tcagtgaatcacacaaacaaagctgtcaacatgcccaacaaacatactacaaatagttgaccaataaacat 48155730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 453 - 636
Target Start/End: Original strand, 48147235 - 48147412
Alignment:
453 ctctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctc 552  Q
    |||||| |||||||||||||| |  ||||||| |||| |||| |||  || |||||||||||| ||||| ||||||||  | || |  |||||||||       
48147235 ctctagaagctgtcctttgtcgttatacttcaacaattcagtttcaccatttgttccaataatgtcaccactttttgtggagcatataggggaaaag--- 48147331  T
553 tcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
       | |||| |||||| |||||||| |  | |||| ||||||||||| |||||||||||||| || ||||||||||||||||||    
48147332 ---tagggaatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttca 48147412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 48887302 - 48887186
Alignment:
49 gtgtaattgtgattttgatcttgatcaacatgcataaattcatc-aactaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaac 147  Q
    ||||||||||||||||||||||| | |||||||  ||||||||| |||||| |||| ||  ||||||||||||||||  ||||| ||||| ||||||| |    
48887302 gtgtaattgtgattttgatcttgtttaacatgctaaaattcatcaaactaatttaccatgaaaaacaatttcaagcagtgaccaaaacatgcattagagc 48887203  T
148 ccaatccagttgcacat 164  Q
     ||||||| || |||||    
48887202 tcaatccaattacacat 48887186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 501 - 636
Target Start/End: Original strand, 45365784 - 45365919
Alignment:
501 atctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttgggagtgccattaatagacagaccatgagttttagtccaagat 600  Q
    ||||||||||||||||||||||||||||||| | || || |||||||||   |   ||||| |||||| |||||  ||| | ||||| || ||||||||     
45365784 atctgttccaataatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagac 45365883  T
601 gaatgcactttgtactccttcatcacccatatttca 636  Q
    ||| ||||||| || || ||||||||||||||||||    
45365884 gaacgcactttatattctttcatcacccatatttca 45365919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 501 - 636
Target Start/End: Original strand, 45371638 - 45371773
Alignment:
501 atctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttgggagtgccattaatagacagaccatgagttttagtccaagat 600  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||  |    | |||  |||||  ||||  ||| ||  ||| |||||||||||     
45371638 atctgttccaattatatcaccgctttttgtacaacacaatggggaaaagtaccgagttggaacgccatcgataggaagaacaaaagtcttagtccaagac 45371737  T
601 gaatgcactttgtactccttcatcacccatatttca 636  Q
    |||||||||||||| || ||||| ||||||||||||    
45371738 gaatgcactttgtattctttcataacccatatttca 45371773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 570 - 636
Target Start/End: Complemental strand, 7790508 - 7790442
Alignment:
570 aatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||||| ||| || |||||||||||||||| |||||||||||||| || ||||||||||||||||||    
7790508 aatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttca 7790442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 636
Target Start/End: Complemental strand, 48871096 - 48870922
Alignment:
462 ctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttggga 561  Q
    |||||| |||||||| ||||||| ||||||| |  ||  || || ||||||||||||||| ||||||||| | |||||||||||||||  ||| | || |    
48871096 ctgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaa 48870997  T
562 gtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
     || ||| || ||| ||| || |||| || |||||||| || | ||||||||| || ||||||||||| ||||||    
48870996 atgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttca 48870922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 636
Target Start/End: Complemental strand, 48876400 - 48876226
Alignment:
462 ctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttggga 561  Q
    |||||| |||||||| ||||||| ||||||| |  ||  || || ||||||||||||||| ||||||||| | |||||||||||||||  ||| | || |    
48876400 ctgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaa 48876301  T
562 gtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
     || ||| || ||| ||| || |||| || |||||||| || | ||||||||| || ||||||||||| ||||||    
48876300 atgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttca 48876226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 584 - 636
Target Start/End: Complemental strand, 7878797 - 7878745
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||    
7878797 gagttttaatccaagatgaatgcactttgtattctttcatcacccatatttca 7878745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 584 - 636
Target Start/End: Complemental strand, 7908716 - 7908664
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||    
7908716 gagttttattccaagatgaatgcactttgtattctttcatcacccatatttca 7908664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 584 - 636
Target Start/End: Original strand, 48156076 - 48156128
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||||||||||||||| |||||||||||||| || ||||||||||||||||||    
48156076 gagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttca 48156128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 48160479 - 48160531
Alignment:
66 atcttgatcaacatgcataaattcatcaactaaattacaatataaaacaattt 118  Q
    ||||||||||||||||||||| ||||||| | |||||||||||||||||||||    
48160479 atcttgatcaacatgcataaactcatcaaattaattacaatataaaacaattt 48160531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 453 - 636
Target Start/End: Complemental strand, 48853226 - 48853043
Alignment:
453 ctctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctc 552  Q
    ||||||||  ||||||| | |||| ||||||| ||||||| | |||  ||| ||||||||||||||||| || |||||| |||| | ||||||||||       
48853226 ctctagcaaatgtccttcgccatcatacttcaccaatccactatcaccatccgttccaataatatcaccactctttgtacaacatattggggaaaagtag 48853127  T
553 tcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |   ||||| ||  | ||| ||| ||| || |||| ||||||||||| ||| |||||||||| || ||||| ||||||||||||    
48853126 tgagtgggaatggaactaaaagaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttca 48853043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 49043325 - 49043427
Alignment:
21 ttctaatgaagtgctttaaataagagaagtgtaattgtgattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttca 120  Q
    ||||||||||||||||| ||| | ||  ||||| |||| ||||||||||| |  |||||||||||| ||||||| ||||||||||| || ||||||| ||    
49043325 ttctaatgaagtgctttgaatcaaagt-gtgtatttgtaattttgatctttagtaacatgcataaactcatcaaataaattacaatttataacaattaca 49043423  T
121 agca 124  Q
    ||||    
49043424 agca 49043427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 462 - 636
Target Start/End: Complemental strand, 48886782 - 48886608
Alignment:
462 ctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttggga 561  Q
    |||||| |||||||| ||||||| ||||||| |  ||  || || ||||||||||||||| ||||||||| | |||||||||||||||  ||| |  | |    
48886782 ctgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcagaa 48886683  T
562 gtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
     || ||| || ||| ||| || |||| || |||||||| || | ||||||||| || ||||||||||| ||||||    
48886682 atgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttca 48886608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 450 - 636
Target Start/End: Original strand, 49043681 - 49043867
Alignment:
450 atactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaag 549  Q
    ||||||||| | ||||||||| ||||| ||||||| |||||||   |||  ||| |||||||||||||||||  |||||||| |||| | ||| |  |||    
49043681 atactctagaaactgtcctttttcatcatacttcaccaatccaacttcaccatcagttccaataatatcaccaatttttgtacaacatattggagcgaag 49043780  T
550 ctctcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
       |   ||||| || ||| |||||| | | || |||| |||||||| || |||||||||||||| || ||||||||||||||||||    
49043781 taatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttca 49043867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 450 - 636
Target Start/End: Original strand, 49048068 - 49048254
Alignment:
450 atactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaag 549  Q
    ||||||||| | ||||||||| ||||||||||||| |||||||   |||  ||| ||| ||||||||||||| |||||||||   || | ||| || |||    
49048068 atactctagaaactgtcctttttcatcgtacttcaccaatccaacttcaccatcagttgcaataatatcaccactttttgtacggcatattggagagaag 49048167  T
550 ctctcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |  | | ||||| || ||| | |||| | | ||  ||| |||||||| || ||||||||||| ||||| ||||||||||||||||||    
49048168 caatgggtgggaatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttca 49048254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 47208870 - 47208773
Alignment:
66 atcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatccagttgcaca 163  Q
    ||||||||||||  ||||||||||||||| |||||| ||||||| |||||||||||  |  ||||| || |||||| || || |||||||||| ||||    
47208870 atcttgatcaacgcgcataaattcatcaaataaatttcaatatagaacaatttcaactagtgaccacaatatacatcagcactcaatccagttacaca 47208773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 233
Target Start/End: Original strand, 48170187 - 48170334
Alignment:
97 aaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaatccagttgcacatacataa-----------tcacaaaaacaaagt 185  Q
    |||||||||||||| |||||||| ||||  ||||| |||||||||||| || |||||||||| ||||| |||||           ||||| ||||||||     
48170187 aaattacaatataatacaatttctagcagtgaccacaacatacattagcactcaatccagttacacatgcataaataacagtgaatcacacaaacaaagc 48170286  T
186 tgtcaacatttccaataaacatattacaaacaattgaccaataaacat 233  Q
    | ||||| |||| || ||||||| |||||| | |||||||||||||||    
48170287 tatcaacctttcaaacaaacatactacaaatagttgaccaataaacat 48170334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 7772965 - 7773029
Alignment:
177 aaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgac 241  Q
    ||||||||||||||| ||||||||||| | ||| ||||| |||| ||||||||||||| ||||||    
7772965 aaacaaagttgtcaatatttccaataagcctatgacaaataattaaccaataaacattccatgac 7773029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 48899618 - 48899526
Alignment:
171 tcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgac-caataaacatttcatgacatattacattagctcatgtga 262  Q
    ||||| |||||||| |||||| ||||||||||| |||||| ||||  | |||  |||||||||||||||||||||||  || |||||||||||    
48899618 tcacacaaacaaagctgtcaatatttccaataagcatattgcaaaatagtgaaacaataaacatttcatgacatattggatcagctcatgtga 48899526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 636
Target Start/End: Complemental strand, 50666729 - 50666677
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    ||||||||||||||||||||||||||||||| || | ||||||||||| ||||    
50666729 gagttttagtccaagatgaatgcactttgtattcttacatcacccataattca 50666677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 589 - 636
Target Start/End: Complemental strand, 48864444 - 48864397
Alignment:
589 ttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||    
48864444 ttagtccaagacgaatgcactttgtattctttcatcacccatatttca 48864397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 636
Target Start/End: Complemental strand, 48903383 - 48903317
Alignment:
570 aatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||||||||| ||  | |||||||||||||  ||||||||||||| || ||||||||||||||||||    
48903383 aatagacagaacacaaattttagtccaagacaaatgcactttgtattctttcatcacccatatttca 48903317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 584 - 633
Target Start/End: Complemental strand, 7771809 - 7771760
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatt 633  Q
    ||||||||||||| || |||||||||||||| || |||||||||||||||    
7771809 gagttttagtccatgacgaatgcactttgtattctttcatcacccatatt 7771760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 49040378 - 49040455
Alignment:
168 taatcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatat 245  Q
    |||||||| ||||||||||||||| ||| ||||||| ||||||||| | | || ||||||| ||||||  ||||||||    
49040378 taatcacacaaacaaagttgtcaatattaccaataagcatattacagatagttaaccaatatacattttgtgacatat 49040455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 588 - 636
Target Start/End: Original strand, 7773476 - 7773524
Alignment:
588 tttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||| ||||||| |||||||||||||| || ||||||||||||||||||    
7773476 tttaatccaagacgaatgcactttgtattctttcatcacccatatttca 7773524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 636
Target Start/End: Complemental strand, 7801051 - 7800999
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||||||| ||||||| |||||||||||||| || |||| |||||||||||||    
7801051 gagttttattccaagacgaatgcactttgtaatctttcaacacccatatttca 7800999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 636
Target Start/End: Complemental strand, 7813891 - 7813839
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||||||| ||||||| |||||||||||||| || |||| |||||||||||||    
7813891 gagttttattccaagacgaatgcactttgtattctttcaacacccatatttca 7813839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 43595969 - 43596045
Alignment:
76 acatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccagaacatacattagaacccaat 152  Q
    ||||||||||| || | || |||||||||| ||||||||||||| ||||  ||||| ||||||||||| ||| ||||    
43595969 acatgcataaactcgtaaaataaattacaaaataaaacaatttcgagcattgaccacaacatacattaaaactcaat 43596045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 48871468 - 48871388
Alignment:
181 aaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagctcatgtg 261  Q
    |||||||||||||||| |||||||||||||| ||| |  | | ||||||||| ||||| |||||||| || ||| ||||||    
48871468 aaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttcataacatattaaataagcacatgtg 48871388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 48876772 - 48876692
Alignment:
181 aaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagctcatgtg 261  Q
    |||||||||||||||| |||||||||||||| ||| |  | | ||||||||| ||||| |||||||| || ||| ||||||    
48876772 aaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttcataacatattaaataagcacatgtg 48876692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 45365269 - 45365343
Alignment:
169 aatcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacat 243  Q
    ||||||| |||||||| | ||||  |||||||||| |||||||||||   || ||||||||||||| ||||||||    
45365269 aatcacacaaacaaagatatcaatgtttccaataagcatattacaaattgttaaccaataaacattgcatgacat 45365343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 531
Target Start/End: Original strand, 45384454 - 45384484
Alignment:
501 atctgttccaataatatcaccgctttttgta 531  Q
    |||||||||||||||||||||||||||||||    
45384454 atctgttccaataatatcaccgctttttgta 45384484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 48887154 - 48887076
Alignment:
181 aaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagctcatg 259  Q
    |||||||||||||||| |||||||||||| | |||||  | | |||| |||| ||||| |||||||| || ||||||||    
48887154 aaagttgtcaacattttcaataaacatataataaacagctaagcaattaacagttcataacatattaaataagctcatg 48887076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 281 - 347
Target Start/End: Original strand, 49106107 - 49106173
Alignment:
281 tacaaatgcatgcaaacacatagtactctacagatgcagccactgaagagttcatagtacagtataa 347  Q
    ||||||| ||| |||||||||| || |||||| ||||| ||||| ||||||||||| |||| |||||    
49106107 tacaaatccattcaaacacatactaatctacaaatgcaaccactcaagagttcataatacaatataa 49106173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 633
Target Start/End: Original strand, 7237390 - 7237439
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatt 633  Q
    |||||||||||||| | ||||||| |||||| || |||||||||||||||    
7237390 gagttttagtccaaaacgaatgcattttgtattctttcatcacccatatt 7237439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 7787540 - 7787475
Alignment:
179 acaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacata 244  Q
    ||||||||||||| |||| | |||| ||||| ||||||| |  || ||||||||||||||||||||    
7787540 acaaagttgtcaatattttcgataagcatatgacaaacagtaaacgaataaacatttcatgacata 7787475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 48889538 - 48889457
Alignment:
177 aaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagctcat 258  Q
    |||||||| |||||| |||| |||| |||| | |||||| | || || | |||| ||||||||||||||||||| |||||||    
48889538 aaacaaagctgtcaatattttcaattaacaaactacaaagagttaacaactaaatatttcatgacatattacatcagctcat 48889457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 636
Target Start/End: Complemental strand, 7786878 - 7786826
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||| ||| |||||||| ||||||| ||||| || ||||||||||||||||||    
7786878 gagtcttattccaagataaatgcacgttgtattctttcatcacccatatttca 7786826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 37826188 - 37826248
Alignment:
186 tgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatatt 246  Q
    |||||| ||||  ||||| |||||| |||||| || ||||||||||||||||||| |||||    
37826188 tgtcaatatttgtaataagcatattccaaacagttaaccaataaacatttcatgaaatatt 37826248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 45384080 - 45384171
Alignment:
169 aatcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagctcatgtg 261  Q
    ||||||| ||||| ||||||||| ||||| ||||| |||||||||||   || ||||||| ||||| |||||||| ||  || ||||||||||    
45384080 aatcacacaaacagagttgtcaatatttc-aataagcatattacaaattgttaaccaatagacattgcatgacatgttcgatcagctcatgtg 45384171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 636
Target Start/End: Original strand, 45384547 - 45384591
Alignment:
592 gtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||||||| ||||||||||| || || ||||||||||||||||||    
45384547 gtccaagacgaatgcactttatattctttcatcacccatatttca 45384591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 588 - 636
Target Start/End: Complemental strand, 47208287 - 47208239
Alignment:
588 tttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    ||||||||||||||| || |||||||| || |||||||||| |||||||    
47208287 tttagtccaagatgattgtactttgtattctttcatcacccttatttca 47208239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 47208750 - 47208710
Alignment:
175 aaaaacaaagttgtcaacatttccaataaacatattacaaa 215  Q
    |||||| ||||||||||||||||||| ||||||| ||||||    
47208750 aaaaaccaagttgtcaacatttccaacaaacatactacaaa 47208710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 549
Target Start/End: Complemental strand, 48899269 - 48899189
Alignment:
469 ttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaag 549  Q
    |||||||| ||||||| |||||||   |||  |||||||||||||||||  || ||||||||| | ||||||||| |||||    
48899269 ttgtcatcatacttcaccaatccaaattcaccatctgttccaataatatagccactttttgtacagcacaatgggtaaaag 48899189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 49058046 - 49058097
Alignment:
198 caataaacatattacaaacaattgaccaataaacatttcatgacatattacat 250  Q
    |||||||||||||||||    |||||||||||||| |||||||||||||||||    
49058046 caataaacatattacaagtgtttgaccaataaaca-ttcatgacatattacat 49058097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 440 - 549
Target Start/End: Original strand, 4030291 - 4030400
Alignment:
440 aatagaagcgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaa 539  Q
    ||||| |||||| |||||||| ||||||||||||||| ||||||| |||| ||||  ||  || |||||||||||||||||| ||| ||||| | ||||     
4030291 aatagcagcgatgctctagcaactgtcctttgtcatcatacttcaccaattcagtaccaccatatgttccaataatatcaccacttattgtagagcacat 4030390  T
540 tggggaaaag 549  Q
    ||||||||||    
4030391 tggggaaaag 4030400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 15349896 - 15349806
Alignment:
49 gtgtaattgtgattttgatcttgatcaacatgcataaattcatc-aactaaattacaatataaaacaatttcaagcaacgaccagaacata 138  Q
    ||||||||||||||||||||||| | || ||||| ||| ||||| |||||| |||| ||||||||| ||||||| || |||||| ||||||    
15349896 gtgtaattgtgattttgatcttgtttaatatgcaaaaactcatcaaactaatttaccatataaaacgatttcaaacagcgaccaaaacata 15349806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 360
Target Start/End: Original strand, 4029986 - 4030160
Alignment:
190 aacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattacattagctcatgtgatagtactgattcatgctatacaaatgc 289  Q
    ||||||| ||||||||||||| ||||  ||| | |||||| |||||||||| |||||| ||||||| |||||  | ||||||||   ||  |||||||||    
4029986 aacattttcaataaacatattccaaatgattaatcaataaccatttcatgaaatattaaattagctaatgtggca-tactgatt--ggcattacaaatgc 4030082  T
290 a-------tgcaaacacatagtactctacagatgcagccactgaagagttcatagtacagtataaatatcaagaaaat 360  Q
    |       | |||||||||||||| ||||| ||||| || |  ||||||||||| |||| ||||| ||||||||||||    
4030083 attcaaagttcaaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattatcaagaaaat 4030160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 29697246 - 29697149
Alignment:
59 gattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgaccaga-acatacattagaacccaatcca 155  Q
    ||||||||| |||||||||||||||||  |||| || | |||||||||||||| ||||||||| ||||||||| | |||||||||||||  |||||||    
29697246 gattttgatattgatcaacatgcataagatcataaaatcaattacaatataaaccaatttcaaccaacgaccacagacatacattagaatacaatcca 29697149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 258
Target Start/End: Complemental strand, 29689130 - 29688921
Alignment:
59 gattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagcaacgacca-gaacatacattagaacccaatccagt 157  Q
    ||||||||| ||||||||||| |||||  |||| || | |||||||||||||| |||||||||  || |||||  ||||| ||||||||| |||||||      
29689130 gattttgatattgatcaacattcataagatcataaaatcaattacaatataaaccaatttcaaataatgaccacaaacatgcattagaacgcaatccata 29689031  T
158 tgcacatacata---------atcacaaaaacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatattac 248  Q
    | |||  ||| |         |||| | ||||||||  |||||||||| ||||||||| | ||||||   |||||||||||||||||||||||||||| |    
29689030 tacacgcacaaacaacattgcatcatagaaacaaagcagtcaacattttcaataaacacaatacaaatgtttgaccaataaacatttcatgacatatttc 29688931  T
249 attagctcat 258  Q
    || |||||||    
29688930 atcagctcat 29688921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 29711593 - 29711651
Alignment:
59 gattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatt 117  Q
    |||||||||||||||||||||||||||| ||||||| | ||| | ||||||||||||||    
29711593 gattttgatcttgatcaacatgcataaactcatcaaatcaatgaaaatataaaacaatt 29711651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 589 - 632
Target Start/End: Original strand, 42561985 - 42562028
Alignment:
589 ttagtccaagatgaatgcactttgtactccttcatcacccatat 632  Q
    |||||||||||||||||||||||||| || ||||||||||||||    
42561985 ttagtccaagatgaatgcactttgtattctttcatcacccatat 42562028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 594 - 636
Target Start/End: Complemental strand, 179462 - 179420
Alignment:
594 ccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
179462 ccaagatgaatgcactttgtattctttcatcacccatatttca 179420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 636
Target Start/End: Complemental strand, 9120191 - 9120125
Alignment:
570 aatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||||||| | || |||||||  ||||||| |||||||||||||| || ||||||||||||||||||    
9120191 aatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttca 9120125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 9120740 - 9120673
Alignment:
58 tgattttgatcttgatcaacatgcataaattcatca-actaaattacaatataaaacaatttcaagca 124  Q
    ||||||||||||||||  ||||||||||| |||| | ||||| |||| | ||||||||||||||||||    
9120740 tgattttgatcttgattgacatgcataaactcatgagactaatttaccaaataaaacaatttcaagca 9120673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 396
Target Start/End: Complemental strand, 29697001 - 29696896
Alignment:
293 caaacacatagtactctacagatgcagccactgaagagttcatagtacagtataaatatcaagaaaatgaa--tggtgaagaagaatattccacaacctc 390  Q
    |||||| ||| ||| ||||| ||||||| ||| |||||| |||| |||| ||||| ||| ||||  |||||  ||||||||||||||| | || ||||||    
29697001 caaacatatattaccctacaaatgcagctactcaagagtccataatacaatataattataaagatcatgaaaatggtgaagaagaatacttcaaaacctc 29696902  T
391 attctt 396  Q
    ||||||    
29696901 attctt 29696896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 21017393 - 21017301
Alignment:
20 tttctaatgaagtgctttaaataagagaagtgtaattgtgattttgatcttgatcaacatgcataaattcatcaactaaattacaatataaaa 112  Q
    |||||||||||||  ||| ||  ||||  ||||| |||||||||||||||| |  |||||||||||| ||||||| |||||||||||||||||    
21017393 tttctaatgaagtaatttgaactagagtcgtgtatttgtgattttgatctttagtaacatgcataaactcatcaaataaattacaatataaaa 21017301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 14197230 - 14197288
Alignment:
66 atcttgatcaacatgcataaattcatcaactaaattacaatataaaacaatttcaagca 124  Q
    |||||||| |||||||||||| ||||||| | ||||||||||||||||||||| |||||    
14197230 atcttgatgaacatgcataaactcatcaaattaattacaatataaaacaattttaagca 14197288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 631
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
591 agtccaagatgaatgcactttgtactccttcatcacccata 631  Q
    ||||||||||||||||| |||||| || |||||||||||||    
14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 636
Target Start/End: Complemental strand, 21016235 - 21016183
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||| ||||||||||| ||||| |||||||| || ||||| ||||||||||||    
21016235 gagtcttagtccaagacgaatgtactttgtattctttcataacccatatttca 21016183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 531
Target Start/End: Original strand, 47451411 - 47451494
Alignment:
448 cgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgta 531  Q
    |||| ||||| || ||||||||||||||  ||||| | |||||| || |||| ||||||||||||||||||||| |||||||||    
47451411 cgatgctctaacaactgtcctttgtcattatacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgta 47451494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 11004985 - 11005034
Alignment:
50 tgtaattgtgattttgatcttgatcaacatgcataaattcatcaactaaa 99  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||| ||||    
11004985 tgtaattatgattttgatcttgatcaacatgcaaaaactcatcaaataaa 11005034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 636
Target Start/End: Original strand, 11024150 - 11024202
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    |||| ||||||||||| |||||||||||||| || ||||| ||||||||||||    
11024150 gagtcttagtccaagacgaatgcactttgtattctttcataacccatatttca 11024202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 589 - 636
Target Start/End: Original strand, 11005580 - 11005627
Alignment:
589 ttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    ||||||||||| |||||||||||||| || ||||| ||||||||||||    
11005580 ttagtccaagacgaatgcactttgtattctttcataacccatatttca 11005627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 636
Target Start/End: Original strand, 11015138 - 11015190
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 636  Q
    ||||||||  |||||| |||||||||||||| || ||||| ||||||||||||    
11015138 gagttttaacccaagacgaatgcactttgtattctttcataacccatatttca 11015190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 24381927 - 24381868
Alignment:
184 gttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacat 243  Q
    |||||||| ||||||||||||||| ||||||| | || ||||||||||||||||||||||    
24381927 gttgtcaatatttccaataaacatgttacaaatagttaaccaataaacatttcatgacat 24381868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 24368064 - 24368006
Alignment:
64 tgatcttgatcaacatgcataaattcatc-aactaaattacaatataaaacaatttcaa 121  Q
    ||||||||||||||||| ||||| ||||| |||||| |||| |||||||||||||||||    
24368064 tgatcttgatcaacatggataaactcatcaaactaatttaccatataaaacaatttcaa 24368006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 632
Target Start/End: Complemental strand, 24416192 - 24416144
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatat 632  Q
    ||||||||||||||||||| ||| ||||||| || ||||||||||||||    
24416192 gagttttagtccaagatgactgccctttgtattctttcatcacccatat 24416144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 24341262 - 24341224
Alignment:
177 aaacaaagttgtcaacatttccaataaacatattacaaa 215  Q
    |||||||||||| || |||||||||||||||||||||||    
24341262 aaacaaagttgttaatatttccaataaacatattacaaa 24341224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 215
Target Start/End: Complemental strand, 24353627 - 24353589
Alignment:
177 aaacaaagttgtcaacatttccaataaacatattacaaa 215  Q
    |||||||||||| || |||||||||||||||||||||||    
24353627 aaacaaagttgttaatatttccaataaacatattacaaa 24353589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 629
Target Start/End: Complemental strand, 24323184 - 24323139
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcaccca 629  Q
    ||||||||||| ||||||| ||||||||||| || |||||||||||    
24323184 gagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 632
Target Start/End: Complemental strand, 24310630 - 24310582
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatat 632  Q
    |||||||| ||||||| || ||||||||||| || ||||||||||||||    
24310630 gagttttactccaagaagactgcactttgtattctttcatcacccatat 24310582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 632
Target Start/End: Complemental strand, 24367579 - 24367531
Alignment:
584 gagttttagtccaagatgaatgcactttgtactccttcatcacccatat 632  Q
    |||||||||||||||| |||||||||||||| || | ||| ||||||||    
24367579 gagttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 29351178 - 29351111
Alignment:
293 caaacacatagtactctacagatgcagccactgaagagttcatagtacagtataaatatcaagaaaat 360  Q
    |||||||||||||| ||||| ||||| ||||  ||||||||||| |||| ||||| ||||||||||||    
29351178 caaacacatagtaccctacaaatgcaaccacccaagagttcataatacaatataattatcaagaaaat 29351111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 440 - 521
Target Start/End: Complemental strand, 29350980 - 29350899
Alignment:
440 aatagaagcgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcacc 521  Q
    ||||| |||||| |||||||| ||||||||||||||  ||||||| |||| ||||  ||  ||| |||||||||||||||||    
29350980 aatagcagcgatgctctagcaactgtcctttgtcataatacttcaccaattcagtaccaccatccgttccaataatatcacc 29350899  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 29351251 - 29351214
Alignment:
224 caataaacatttcatgacatattacattagctcatgtg 261  Q
    |||||| |||||||||||||||||||||||||||||||    
29351251 caataatcatttcatgacatattacattagctcatgtg 29351214  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 48884720 - 48884652
Alignment:
178 aacaaagttgtcaacatttccaataaacatattacaaacaattgaccaataaacatttcatgacatatt 246  Q
    ||||||| |||||| ||||||||||| || |||| ||| |||| |||| ||||||||||||| ||||||    
48884720 aacaaagctgtcaatatttccaataaccaaattaaaaataattaaccactaaacatttcatgtcatatt 48884652  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 48884615 - 48884563
Alignment:
284 aaatgcatgcaaacacatagtactctacagatgcagccactgaagagttcata 336  Q
    |||||||  |||||||||| ||||||||| ||||||||||  |||||||||||    
48884615 aaatgcagtcaaacacatattactctacaaatgcagccaccaaagagttcata 48884563  T

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