View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2539_low_2 (Length: 540)
Name: NF2539_low_2
Description: NF2539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2539_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 38154908 - 38155429
Alignment:
| Q |
1 |
gaaaagcattattatgtagaaagaggaataccggagaggcaaataaaacggctgcagttggtggtaaaacaagtcttaagctatccattgggtgcttatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38154908 |
gaaaagcattattatgtagaaagaggaataccggagaggcaaataaaacggctgcagttggtggtaaaacaagtcttaagctatccattgggtgcttatg |
38155007 |
T |
|
| Q |
101 |
gtggcaaccatggaaaagaaaatgaaaagtattaccccaatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38155008 |
gtggcaaccatggaaaagaaaatgaaaagtattaccccaatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccat |
38155107 |
T |
|
| Q |
201 |
acaaaaatgccaagaagtacgaaaagagtgatttgaggaatagggagtcccaatctgaaagagttatatatgaaacaagatgcaactggtacccaaacaa |
300 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38155108 |
acaaaaatgccaagtagcacgaaaagagtgatttgaggaatagggagtcccaatctgaaagagttatatatgaaataagatgcaactggtacccaaacaa |
38155207 |
T |
|
| Q |
301 |
ttggaaccacccaccaaacagtgcgtgtgaaaaactgttccaacaaaaaattcttaattaattttgatacattaaaatgaatgaatgatatgaaaaatgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38155208 |
ttggaaccacccaccaaacagtgcgtgtgaaaaactgttccaacaaaaaattctcaattaattttgatacattaaaatgaatgaatgatatgaaaaatgt |
38155307 |
T |
|
| Q |
401 |
aatgtagctagggttatataggtacctccaagaaactgctatgaaagaaacgagggctttccttgctcataataggttggtgaacccattcttcataagc |
500 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38155308 |
aatgtatttagggttatataggtacctccaagaaactgctatgaaagaaacgagggctttccttgctcataataggttggtgaacccattcttcataagc |
38155407 |
T |
|
| Q |
501 |
ttcaccaagataaccaacctgt |
522 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38155408 |
ttcaccaagataaccaacctgt |
38155429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 59 - 346
Target Start/End: Original strand, 38163762 - 38164049
Alignment:
| Q |
59 |
tggtggtaaaacaagtcttaagctatccattgggtgcttatggtggcaaccatggaaaagaaaatgaaaagtattaccccaatagctcttagtttgaaca |
158 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
38163762 |
tggtggaaaaacaagtcttaagctatccatagggtgcttatggtggcaaccatggagaagataatgcattgtatttccccaatagctcttagtttgaaca |
38163861 |
T |
|
| Q |
159 |
tggaaaaggaaacggtgcaacaagtattcgaccaatgtccatacaaaaatgccaagaagtacgaaaagagtgatttgaggaatagggagtcccaatctga |
258 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| || ||||||| ||||||||||||||||| |
|
|
| T |
38163862 |
tggaaaagaaaacggtgcaacaagtattcggtcaatgtccatacaaaaatgccgagaagcacgaaaagagggaggtgaggaacagggagtcccaatctga |
38163961 |
T |
|
| Q |
259 |
aagagttatatatgaaacaagatgcaactggtacccaaacaattggaaccacccaccaaacagtgcgtgtgaaaaactgttccaacaa |
346 |
Q |
| |
|
||||| |||| |||||||||||||||| ||| | ||||| |||||||| |||||||||| |||| || ||||||| |||||||||||| |
|
|
| T |
38163962 |
aagagctataaatgaaacaagatgcaattggaatccaaataattggaatcacccaccaagcagttcgcgtgaaaacctgttccaacaa |
38164049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 394 - 522
Target Start/End: Original strand, 38164193 - 38164321
Alignment:
| Q |
394 |
aaaatgtaatgtagctagggttatataggtacctccaagaaactgctatgaaagaaacgagggctttccttgctcataataggttggtgaacccattctt |
493 |
Q |
| |
|
||||| |||||||| |||||| ||||||||||||||| | ||||||||||||||||||||| |||||||| |||||||||||| |||||||||| | |
|
|
| T |
38164193 |
aaaatttaatgtaggtagggtagggtaggtacctccaagatattgctatgaaagaaacgagggccttccttgcccataataggttgatgaacccatttat |
38164292 |
T |
|
| Q |
494 |
cataagcttcaccaagataaccaacctgt |
522 |
Q |
| |
|
||||| |||||||||||| |||||||||| |
|
|
| T |
38164293 |
cataatcttcaccaagatgaccaacctgt |
38164321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 27841513 - 27841584
Alignment:
| Q |
139 |
aatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccatacaaaaatgc |
210 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||| |||| ||||||| |||||| ||||||| |
|
|
| T |
27841513 |
aataggtcttagtttgaacatggaaagggagacggtgcaacaattatttgaccaatttccatatgaaaatgc |
27841584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 48189377 - 48189306
Alignment:
| Q |
139 |
aatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccatacaaaaatgc |
210 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| |||| |||| ||||||| |||||| ||||||| |
|
|
| T |
48189377 |
aatagatcttagtttgaacatggaaagggaaacggtgccacaattatttgaccaatttccataagaaaatgc |
48189306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 2741150 - 2741088
Alignment:
| Q |
139 |
aatagctcttagtttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccata |
201 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||| |||| ||||||| |||||| |
|
|
| T |
2741150 |
aataggtcttagtttgaacatggaaagggatacggtgcaacaattatttgaccaatttccata |
2741088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 520
Target Start/End: Complemental strand, 11770701 - 11770623
Alignment:
| Q |
442 |
tgaaagaaacgagggctttccttgctcataataggttggtgaacccattcttcataagcttcaccaagataaccaacct |
520 |
Q |
| |
|
||||||||||| || | ||||||||| | ||| || || |||||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
11770701 |
tgaaagaaacggggaccttccttgctaacaatgggctgatgaacccactcttcataagcctcaccaagatgtccaacct |
11770623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University