View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2539_low_3 (Length: 419)
Name: NF2539_low_3
Description: NF2539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2539_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 20 - 401
Target Start/End: Original strand, 36952593 - 36952974
Alignment:
| Q |
20 |
ttcaaatttaacctcaatcaaactcaaaagaattatccacaccctcttagtttcacacttgtgtagaataattcgtgcactatccaaagtcaaagatttt |
119 |
Q |
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| T |
36952593 |
ttcaaatttaacctcaatcaaactcaaaagaattatccacaccctcttagtttcacacttgtgtagaataattcgtgcactatccaaagtcaaagatttt |
36952692 |
T |
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| Q |
120 |
atagttgagattctcaaagacgacaacaactcaaccatcaacttcacttattacccttcctctcacaaaaaacgtaacaacataagaaaaaagatcattt |
219 |
Q |
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| T |
36952693 |
atagttgagattctcaaagacgacaacaactcaaccatcaacttcacttattacccttcctctcacaaaaaacgtaacaacataagaaaaaagatcattt |
36952792 |
T |
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| Q |
220 |
taggttcctttagacttcattataattggtgttcttcaaaatcttctcatgttttaccggttccggaacgggtttatgaaggtttgtttgatacttcaga |
319 |
Q |
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| T |
36952793 |
taggttcctttagacttcattataattggtgttcttcaaaatcttctcatgttttgccggttccggaacgggtttatgaaggtttgtttgatacttcaga |
36952892 |
T |
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| Q |
320 |
gcagccaaaaagtgaggattgtcctgactcacatcttgcaggatatttacagtggcttgaggagaagaagattcaagagggt |
401 |
Q |
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| T |
36952893 |
gcagccaaaaagtgaggattgtcctgactcacatcttgcaggatatttacagtggcttgaggagaagaagattcaagagggt |
36952974 |
T |
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