View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2539_low_5 (Length: 343)

Name: NF2539_low_5
Description: NF2539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2539_low_5
NF2539_low_5
[»] chr8 (7 HSPs)
chr8 (1-325)||(38321291-38321615)
chr8 (1-325)||(38300546-38300870)
chr8 (1-325)||(38309193-38309517)
chr8 (1-325)||(38317196-38317520)
chr8 (17-325)||(38326041-38326349)
chr8 (4-310)||(38313802-38314106)
chr8 (1-325)||(38306455-38306767)
[»] chr4 (1 HSPs)
chr4 (1-325)||(38849816-38850149)


Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 38321615 - 38321291
Alignment:
Q  1 acttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321615 acttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaata 38321516  T
Q  101 cttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321515 cttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgag 38321416  T
Q  201 ccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcctttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321415 ccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcctttc 38321316  T
Q  301 agccattctctttatagcttcatct 325  Q
    |||||||||||||||||||||||||    
T  38321315 agccattctctttatagcttcatct 38321291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 38300870 - 38300546
Alignment:
Q  1 acttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaata 100  Q
    |||||||||||||||||||| |||| |||| || || |||| ||| ||||||||||||||||||| |||||| ||| |||||||||| | ||||| | ||    
T  38300870 acttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaaggagta 38300771  T
Q  101 cttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgag 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||  |  ||  ||||||||||||||||||||| ||    
T  38300770 cttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaacaattag 38300671  T
Q  201 ccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcctttc 300  Q
    ||||||| |||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  38300670 ccaatgttgaaagcttaatccttgggtcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttc 38300571  T
Q  301 agccattctctttatagcttcatct 325  Q
    |||||||||||||||| ||||||||    
T  38300570 agccattctctttatatcttcatct 38300546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 38309517 - 38309193
Alignment:
Q  1 acttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaata 100  Q
    |||||||||||||||||| |||||| ||||||| || ||||||||||||||||  |||||||||| ||||||||| ||||||||||| ||||||||| ||    
T  38309517 acttacatcaaataggccctgagataaagactttaacttcttttgcaatggcacactagaagattggtcctgaattgttctttgcacgccagaagaagta 38309418  T
Q  101 cttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgag 200  Q
    ||||||| ||||| ||||| |||||||||||||||||| ||||||||||  |||||||||||||| ||||  ||  ||| ||||||||||||||||| ||    
T  38309417 cttttgcaagaattcttgtgaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcattaagttttgagtaacaataag 38309318  T
Q  201 ccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcctttc 300  Q
    ||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  38309317 ccaatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaacttggtcaacatcctttc 38309218  T
Q  301 agccattctctttatagcttcatct 325  Q
    | |||||||||||||| ||||||||    
T  38309217 aaccattctctttatatcttcatct 38309193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 38317520 - 38317196
Alignment:
Q  1 acttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaata 100  Q
    ||||||||  ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||||| |||||||||  |  ||||||||| |     
T  38317520 acttacattgaataggccgtgagataaagactttaatttcttttgcaatggcatggtagaagattggtcctgagtagttctttttaggccagaagaagtg 38317421  T
Q  101 cttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgag 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||   || ||||  ||   |||||||||||||||||||| ||    
T  38317420 cttttgctagaatacttgtcaaatagcatgtacaactttctctttactagttgcaacttctgctcgcaggttgatggatcaagttttgagtaacaataag 38317321  T
Q  201 ccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcctttc 300  Q
    |||| || |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  38317320 ccaacgtcgaaaacttcatccgtgggtcaagaactgctcccagtgcaagaacaacactatactcatcccaatatttgtcaaactcgctcatcatcctttc 38317221  T
Q  301 agccattctctttatagcttcatct 325  Q
    |||||||||||||||| ||| ||||    
T  38317220 agccattctctttataactttatct 38317196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 38326349 - 38326041
Alignment:
Q  17 ccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaatacttttgctagaatact 116  Q
    ||||||||| |||||||  | ||||||||||||| |||| | ||||||| | |||||| |||||||||||  ||||||||| ||| || |||||||||||    
T  38326349 ccgtgagataaagacttggagttcttttgcaatgacatggtcgaagattggccctgaacagttctttgcatgccagaagaagtacgttggctagaatact 38326250  T
Q  117 tgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgagccaatgtagaaaactt 216  Q
    || |||||||||||||||||||  || |||||| ||||||||||||||||||||  ||  ||||||||||||||||||||| ||||||||| ||||| ||    
T  38326249 tgccaaatagcatgtacaacttcgtccttacttgttgcaacttcctttcacaggttgatgcatcaagttttgagtaacaataagccaatgttgaaaattt 38326150  T
Q  217 catccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcctttcagccattctctttata 316  Q
     ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||    
T  38326149 aatccgtgggtcaagaaccgctcccaatgcaagaacaacactgtactcattccaaaatttgtcaaacttgctcatcatcctttcagccattctctttata 38326050  T
Q  317 gcttcatct 325  Q
     ||||||||    
T  38326049 acttcatct 38326041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 4 - 310
Target Start/End: Complemental strand, 38314106 - 38313802
Alignment:
Q  4 tacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaatactt 103  Q
    |||||||| |||| || ||||||||||||   | |||||||||||||||||| ||||||||| | ||| ||||||| ||||||||| ||||||| |||||    
T  38314106 tacatcaactaggtcgagagatgaagactcagagttcttttgcaatggcatggtagaagattggccctaaatagttgtttgcaccctagaagaagtactt 38314007  T
Q  104 ttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgagcca 203  Q
    |||||||| |||||| |||||||||||||||||||  ||||||||| ||||||||||| |||||| |  ||   ||| |||||||||||||||  |||||    
T  38314006 ttgctagagtacttggcaaatagcatgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatctagttttgagtaacaagcagcca 38313907  T
Q  204 atgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcctttcagc 303  Q
    || | ||||| |||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||| |||||||| |||||| |||| |||    
T  38313906 atcttgaaaatttcatccgtgggtcaagaactgctcccattgcaagaacaacac--tactcatcccaatatttcttaaacttgcccatcatacttttagc 38313809  T
Q  304 cattctc 310  Q
    |||||||    
T  38313808 cattctc 38313802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 38306767 - 38306455
Alignment:
Q  1 acttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaata 100  Q
    |||||||||||||||||| |||||| ||||||   | |||||||||||||||||| ||||||||| | |||||| |||| ||||||  ||||||||| ||    
T  38306767 acttacatcaaataggccatgagataaagactcagagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcataccagaagaagta 38306668  T
Q  101 cttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgag 200  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||| |||||| |  ||   ||| |||||||||||||||| ||    
T  38306667 cttttgctagaatacttgtcaaatagcatgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatcgagttttgagtaacaatcag 38306568  T
Q  201 ccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcctttc 300  Q
    ||||  | || || |||||||||||||            ||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||     
T  38306567 ccaaccttgagaatttcatccgtgggt------------ccattgcaagaacaacactatgctcatcccaatatttcttaaacttgcccatcatcctttt 38306480  T
Q  301 agccattctctttatagcttcatct 325  Q
    ||||||||||  |||| ||||||||    
T  38306479 agccattctcgctataacttcatct 38306455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 38849816 - 38850149
Alignment:
Q  1 acttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctga---------atagttctttgcacccca 91  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||| |||||||         ||||||||||| ||||||    
T  38849816 acttacatcaaataggccatgagataaagactttaatttcttttgtaatggcatgctagaagattggtcctgattctccttaatagttctttgaacccca 38849915  T
Q  92 gaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagt 191  Q
    | || | | || |||| ||||| ||| |||||||||||| ||||||| ||||||||||  || | ||||||||||||||  ||  |||| |||||||| |    
T  38849916 gcagtagtgctgttgccagaatgcttctcaaatagcatgcacaactttctctttacttgctgtagcttcctttcacaggttgatgcatccagttttgaat 38850015  T
Q  192 aacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcat 291  Q
    |||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38850016 aacaataagccaaggttgtaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcat 38850115  T
Q  292 catcctttcagccattctctttatagcttcatct 325  Q
    |||||||||||||||| |||||||| ||||||||    
T  38850116 catcctttcagccattttctttatatcttcatct 38850149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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