View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2539_low_6 (Length: 343)
Name: NF2539_low_6
Description: NF2539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2539_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 18303734 - 18304070
Alignment:
| Q |
1 |
cctgaaccggaaacatgcaaaggttgttctgcgagatcaaaagttgtggaagaagtttcggattccatgtatagacacgtattcctgttacccggaagag |
100 |
Q |
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| T |
18303734 |
cctgaaccggaaacatgcaaaggttgttctgcgagatcaaaagttgtggaagaagtttcggattccatgtatagatacgtattcctgttacccggaagag |
18303833 |
T |
|
| Q |
101 |
cattactttccgactcttctatcgatggaggagcgcgatggctgcactggttttactcttacgagagttaactggactggttgtactgacggacatccgc |
200 |
Q |
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| T |
18303834 |
cattactttccgactcttctatcgatggaggagcgcgatggctgcacgggttttactcttacgagagttaactggactggttgtactgacggacatccgc |
18303933 |
T |
|
| Q |
201 |
atctttatactcgagaggaggtgtcgccggagcttgtacgccagcttaggaaatcgaattccagttatccctatctgtttgcaaggaaattctcaccgga |
300 |
Q |
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| T |
18303934 |
atctttatactcgagaggaggtgtcgccggagcttgtacgccagcttaggaaatcgaattccagttacccctatctgtttgcaaggaaattctcaccgga |
18304033 |
T |
|
| Q |
301 |
aactctagcaccgttgatggatatagctgatgatgtc |
337 |
Q |
| |
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| T |
18304034 |
aactctagcaccgttgatggatatagcttatgatgtc |
18304070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 18339954 - 18339626
Alignment:
| Q |
9 |
ggaaacatgcaaaggttgttctgcgagatcaaaagttgtggaagaagtttcggattccatgtatagacacgtattcctgttacccggaagagcattactt |
108 |
Q |
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|||| |||||||||||||| || ||||| | ||| | |||||||||||||||||||| ||| || | | |||| ||||| || ||||||||||| || |
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| T |
18339954 |
ggaagcatgcaaaggttgtggtgagagattataagctatggaagaagtttcggattccttgtgtaaatttggattcttgttatccagaagagcattattt |
18339855 |
T |
|
| Q |
109 |
tccgactcttctatcgatggaggagcgcgatggctgcactggttttactcttacgagagttaactggactggttgtactgacggacatccgcatctttat |
208 |
Q |
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||| |||||| | || |||||||| | |||| || ||||||||||| || ||||||||||| |||||||||||| || |||||||| ||||||||| |
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| T |
18339854 |
tcccactcttttgtctatggaggatctgaatgggtgtactggttttacactgacgagagttaattggactggttgttgggatggacatcctcatctttat |
18339755 |
T |
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| Q |
209 |
actcgagaggaggtgtcgccggagcttgtacgccagcttaggaaatcgaattccagttatccctatctgtttgcaaggaaattctcaccggaaactctag |
308 |
Q |
| |
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|||| |||||||| || |||||||| | || ||||| ||| |||||||| |||||| | ||||| ||||| ||||||||||| ||||| ||| | |
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| T |
18339754 |
actccggaggaggtttccccggagctaattcgacagctgagggtgtcgaattcgagttattcatatctatttgcgaggaaattctcgccggagtgtcttg |
18339655 |
T |
|
| Q |
309 |
caccgttgatggatatagctgatgatgtc |
337 |
Q |
| |
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| ||| ||||||||||||| ||||||||| |
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| T |
18339654 |
ctccgctgatggatatagccgatgatgtc |
18339626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 337
Target Start/End: Complemental strand, 18345118 - 18344784
Alignment:
| Q |
3 |
tgaaccggaaacatgcaaaggttgttctgcgagatcaaaagttgtggaagaagtttcggattccatgtatagacacgtattcctgttacccggaagagca |
102 |
Q |
| |
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|||||||||||||| |||||||||| || ||||||||||| | ||||| ||||||| ||||||||||| | | | ||||| ||||| || || ||||| |
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| T |
18345118 |
tgaaccggaaacatacaaaggttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttatccagaggagca |
18345019 |
T |
|
| Q |
103 |
ttactttccgactcttctatcgatggaggagcgcgatggctgcactggttttactcttacgagagttaactggactggttgtactgacggacatccgcat |
202 |
Q |
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||| ||| ||||||||||||| |||||||| | || || ||||||||||| || || |||||||| ||||| ||| | | || ||||| ||| |
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| T |
18345018 |
ttatttttcgactcttctatcaatggaggatttgaaggggtgtactggttttacactgactagagttaattggaccggtgctgtctatggtcatccacat |
18344919 |
T |
|
| Q |
203 |
ctttatactcgagaggaggtgtcgccggagcttgtacgccagcttaggaaatcgaattccagttatccctatctgtttgcaaggaaattctcaccggaaa |
302 |
Q |
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|||||||||| || |||||||||||||||||| | || ||||| ||| || |||| |||||| | ||||| || || ||||||||||| |||||| |
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| T |
18344918 |
ctttatactccagcagaggtgtcgccggagctttttcgtcagctgagggtctccaattggagttattcatatctattcgctaggaaattctcgccggaat |
18344819 |
T |
|
| Q |
303 |
ctctagcaccgttgatggatatagctgatgatgtc |
337 |
Q |
| |
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||| || ||||||||| |||| || ||||||||| |
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| T |
18344818 |
gtcttgctccgttgatgaatattgccgatgatgtc |
18344784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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