View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2539_low_7 (Length: 313)

Name: NF2539_low_7
Description: NF2539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2539_low_7
NF2539_low_7
[»] chr8 (16 HSPs)
chr8 (1-275)||(13581591-13581867)
chr8 (1-54)||(19505167-19505222)
chr8 (1-53)||(17937691-17937745)
chr8 (240-281)||(13528963-13529004)
chr8 (240-281)||(13618502-13618543)
chr8 (1-51)||(24497843-24497895)
chr8 (5-54)||(17689726-17689777)
chr8 (1-54)||(23192299-23192354)
chr8 (1-54)||(23263298-23263353)
chr8 (1-54)||(24635747-24635802)
chr8 (131-214)||(18790122-18790205)
chr8 (1-53)||(27740227-27740281)
chr8 (240-281)||(18790062-18790103)
chr8 (1-54)||(19156581-19156637)
chr8 (1-56)||(24646734-24646793)
chr8 (1-54)||(22710983-22711038)
[»] chr7 (39 HSPs)
chr7 (252-313)||(21236364-21236425)
chr7 (240-304)||(2352153-2352217)
chr7 (1-54)||(11571998-11572053)
chr7 (1-54)||(15304953-15305008)
chr7 (1-54)||(24810878-24810933)
chr7 (240-313)||(11466921-11466994)
chr7 (1-54)||(1877963-1878018)
chr7 (246-313)||(3401044-3401112)
chr7 (1-54)||(9396620-9396675)
chr7 (1-54)||(9763051-9763106)
chr7 (131-189)||(2091520-2091578)
chr7 (1-54)||(3778263-3778318)
chr7 (245-281)||(4995906-4995942)
chr7 (1-54)||(9065844-9065899)
chr7 (1-54)||(9803543-9803598)
chr7 (7-56)||(16422909-16422960)
chr7 (1-54)||(20598612-20598667)
chr7 (131-214)||(10925135-10925218)
chr7 (2-54)||(12222175-12222229)
chr7 (1-54)||(12366448-12366505)
chr7 (1-53)||(16813276-16813330)
chr7 (241-287)||(1881347-1881393)
chr7 (1-52)||(5035714-5035767)
chr7 (243-307)||(9687103-9687169)
chr7 (253-311)||(13253950-13254008)
chr7 (1-52)||(14114437-14114490)
chr7 (1-52)||(14424087-14424140)
chr7 (255-305)||(22334185-22334235)
chr7 (238-275)||(9071401-9071438)
chr7 (1-54)||(10882872-10882928)
chr7 (240-281)||(10925075-10925116)
chr7 (1-54)||(14304082-14304138)
chr7 (240-307)||(24469109-24469177)
chr7 (240-307)||(24474057-24474125)
chr7 (1-52)||(39284309-39284364)
chr7 (255-295)||(8923216-8923256)
chr7 (209-304)||(9974230-9974326)
chr7 (231-275)||(21544691-21544735)
chr7 (1-54)||(23126291-23126346)
[»] chr3 (29 HSPs)
chr3 (133-207)||(7779321-7779395)
chr3 (240-313)||(25189350-25189423)
chr3 (240-313)||(22991549-22991622)
chr3 (1-54)||(11514198-11514253)
chr3 (1-54)||(13932304-13932359)
chr3 (1-54)||(1470117-1470172)
chr3 (1-54)||(2902947-2903002)
chr3 (1-54)||(7920491-7920546)
chr3 (129-216)||(8713727-8713815)
chr3 (129-216)||(9065614-9065702)
chr3 (1-50)||(12409598-12409649)
chr3 (1-54)||(17761828-17761883)
chr3 (1-54)||(19063148-19063203)
chr3 (1-54)||(19705778-19705833)
chr3 (1-56)||(27851918-27851975)
chr3 (1-50)||(17768752-17768803)
chr3 (1-50)||(19070053-19070104)
chr3 (243-312)||(26419958-26420029)
chr3 (1-52)||(16304902-16304955)
chr3 (1-56)||(21317704-21317761)
chr3 (240-281)||(8839668-8839709)
chr3 (1-56)||(16658338-16658397)
chr3 (1-54)||(19197556-19197612)
chr3 (1-54)||(41495380-41495436)
chr3 (1-54)||(13654314-13654369)
chr3 (1-54)||(13699707-13699762)
chr3 (1-54)||(15648108-15648163)
chr3 (1-54)||(19225796-19225851)
chr3 (1-54)||(20418583-20418638)
[»] chr1 (21 HSPs)
chr1 (245-313)||(23420500-23420568)
chr1 (231-313)||(33175494-33175577)
chr1 (243-313)||(15415893-15415963)
chr1 (129-189)||(25664724-25664784)
chr1 (4-54)||(16478388-16478440)
chr1 (256-313)||(19256834-19256891)
chr1 (231-306)||(50048222-50048299)
chr1 (240-312)||(14932226-14932298)
chr1 (1-33)||(23918120-23918152)
chr1 (129-188)||(25132548-25132608)
chr1 (245-313)||(31318425-31318493)
chr1 (240-313)||(11768903-11768977)
chr1 (1-51)||(31359670-31359723)
chr1 (1-54)||(1090159-1090215)
chr1 (240-313)||(13153585-13153658)
chr1 (231-276)||(25664823-25664868)
chr1 (1-54)||(48704606-48704662)
chr1 (1-54)||(2818978-2819033)
chr1 (231-275)||(17836800-17836844)
chr1 (1-54)||(21617057-21617112)
chr1 (1-54)||(25399741-25399796)
[»] chr5 (16 HSPs)
chr5 (240-313)||(12563972-12564045)
chr5 (1-54)||(20237114-20237169)
chr5 (1-55)||(12079219-12079275)
chr5 (257-304)||(20695944-20695991)
chr5 (240-304)||(15692760-15692824)
chr5 (1-54)||(18672418-18672473)
chr5 (245-313)||(24512758-24512826)
chr5 (1-53)||(27275922-27275976)
chr5 (240-277)||(18179377-18179415)
chr5 (240-305)||(20101009-20101075)
chr5 (246-275)||(24842962-24842991)
chr5 (231-275)||(11273695-11273739)
chr5 (5-54)||(18513836-18513887)
chr5 (246-278)||(22931123-22931155)
chr5 (243-275)||(24518959-24518991)
chr5 (1-54)||(26118332-26118387)
[»] chr6 (20 HSPs)
chr6 (210-304)||(22263586-22263681)
chr6 (1-54)||(14758685-14758740)
chr6 (1-54)||(15542286-15542341)
chr6 (252-313)||(16174377-16174438)
chr6 (1-54)||(25596062-25596117)
chr6 (224-304)||(8037023-8037104)
chr6 (210-275)||(15320092-15320157)
chr6 (1-54)||(15477524-15477578)
chr6 (1-54)||(31719408-31719463)
chr6 (240-313)||(9395440-9395514)
chr6 (1-56)||(15552327-15552384)
chr6 (231-307)||(15576164-15576242)
chr6 (1-54)||(13602562-13602618)
chr6 (1-51)||(20462666-20462718)
chr6 (1-54)||(25592935-25592991)
chr6 (245-281)||(1130607-1130643)
chr6 (211-275)||(15387170-15387234)
chr6 (1-54)||(17868158-17868213)
chr6 (1-54)||(17877941-17877996)
chr6 (1-54)||(24399058-24399113)
[»] chr2 (20 HSPs)
chr2 (240-304)||(23854064-23854128)
chr2 (1-54)||(19320089-19320144)
chr2 (1-54)||(19643375-19643430)
chr2 (255-313)||(14962582-14962640)
chr2 (174-215)||(18932146-18932187)
chr2 (4-54)||(22524522-22524574)
chr2 (1-54)||(33705701-33705756)
chr2 (254-305)||(25461228-25461279)
chr2 (129-187)||(21243360-21243418)
chr2 (209-275)||(21841990-21842056)
chr2 (1-54)||(15668267-15668323)
chr2 (242-306)||(17883470-17883532)
chr2 (256-313)||(21243241-21243298)
chr2 (1-56)||(22187761-22187820)
chr2 (1-51)||(26816307-26816359)
chr2 (240-307)||(31000579-31000648)
chr2 (2-52)||(33241020-33241072)
chr2 (2-52)||(33248941-33248993)
chr2 (1-54)||(24158228-24158283)
chr2 (253-281)||(31275298-31275326)
[»] chr4 (29 HSPs)
chr4 (231-313)||(30797670-30797753)
chr4 (240-313)||(25367697-25367770)
chr4 (246-313)||(19085345-19085410)
chr4 (1-54)||(20577633-20577688)
chr4 (253-313)||(24912163-24912223)
chr4 (240-305)||(8926421-8926487)
chr4 (1-56)||(10328080-10328137)
chr4 (1-52)||(17812051-17812104)
chr4 (129-183)||(18778400-18778454)
chr4 (133-214)||(18446707-18446788)
chr4 (246-313)||(22219914-22219983)
chr4 (1-54)||(2652141-2652196)
chr4 (1-54)||(14356815-14356870)
chr4 (1-54)||(19818901-19818956)
chr4 (1-54)||(24619941-24619996)
chr4 (1-53)||(13306691-13306745)
chr4 (113-158)||(19603089-19603136)
chr4 (243-307)||(13553480-13553546)
chr4 (1-54)||(12417260-12417316)
chr4 (240-281)||(12882123-12882164)
chr4 (8-54)||(14902149-14902197)
chr4 (1-54)||(2940729-2940784)
chr4 (1-54)||(17526133-17526188)
chr4 (257-313)||(18370822-18370878)
chr4 (1-54)||(19809909-19809964)
chr4 (231-275)||(20717948-20717992)
chr4 (1-54)||(21350269-21350324)
chr4 (1-54)||(23088028-23088083)
chr4 (1-33)||(32465721-32465753)
[»] scaffold0999 (1 HSPs)
scaffold0999 (240-313)||(2850-2923)
[»] scaffold0092 (1 HSPs)
scaffold0092 (4-54)||(8443-8495)
[»] scaffold0043 (2 HSPs)
scaffold0043 (1-51)||(1559-1611)
scaffold0043 (1-54)||(25353-25408)
[»] scaffold0772 (1 HSPs)
scaffold0772 (1-54)||(539-594)
[»] scaffold0758 (1 HSPs)
scaffold0758 (1-54)||(4651-4706)
[»] scaffold0522 (2 HSPs)
scaffold0522 (1-54)||(3913-3968)
scaffold0522 (1-54)||(11196-11251)
[»] scaffold0498 (1 HSPs)
scaffold0498 (1-54)||(3000-3055)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-54)||(32022-32077)
[»] scaffold0003 (1 HSPs)
scaffold0003 (7-56)||(11621-11672)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-54)||(112587-112642)
scaffold0002 (1-54)||(116195-116250)
[»] scaffold0386 (1 HSPs)
scaffold0386 (240-275)||(7551-7586)
[»] scaffold0606 (1 HSPs)
scaffold0606 (1-54)||(5862-5915)
[»] scaffold0411 (1 HSPs)
scaffold0411 (1-54)||(12617-12673)
[»] scaffold0490 (1 HSPs)
scaffold0490 (1-54)||(7733-7788)
[»] scaffold0351 (1 HSPs)
scaffold0351 (1-54)||(8950-9005)
[»] scaffold0103 (1 HSPs)
scaffold0103 (231-275)||(36503-36547)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 13581591 - 13581867
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagtattaaaagttaaaacttaccggaaagcacgaactaaccctaatt 98  Q
    |||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13581591 tttgatgataacgaggtattaaaagttcaattgcatatgttaatatttgttcaagtattaaaagttaaaacttaccggaaagcatgaactaaccctaatt 13581690  T
Q  99 ctaggatctaacctaaaacagaaaaataaactaacctaattattcacaaaataaattctattgattaacttttcgaaatatcaacaatcccggacaacaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13581691 ctaggatctaacctaaaacagaaaaataaactaacctaattattcacaaaataaattctattgattaacttttcgaaatatcaacaatcccggacaacag 13581790  T
Q  199 cgtcaaaaacttgatggaggaaatgtgtaaatattggctactgcatcaaatcataacaagtaataaagtagtaagtt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13581791 cgtcaaaaacttgatggaggaaatgtgtaaatattggctactgcatcaaataataacaagtaataaagtagtaagtt 13581867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19505167 - 19505222
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||||||||  |||  |||||||||||||||||    
T  19505167 tttgatgataacaaggtattaaaagttcaatttgatatgttaatatttgttcaagt 19505222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17937745 - 17937691
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaag 53  Q
    ||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||    
T  17937745 tttgatgataacaaggtattaaaagatcaattggatatgttaatatttgttcaag 17937691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 13528963 - 13529004
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtc 281  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  13528963 tgcaccaaatcataataagtaataaagtagtaagttatcgtc 13529004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 13618502 - 13618543
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtc 281  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  13618502 tgcaccaaatcataataagtaataaagtagtaagttatcgtc 13618543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24497843 - 24497895
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttca 51  Q
    ||||| ||||||||||||||||||||||||||| ||||  |||||||||||||    
T  24497843 tttgaagataacaaggtattaaaagttcaattggatatgctaatatttgttca 24497895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 17689777 - 17689726
Alignment:
Q  5 atgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    ||||||||||||||||||||| ||||||| |||  |||||||||||||||||    
T  17689777 atgataacaaggtattaaaagatcaattggatatgttaatatttgttcaagt 17689726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23192299 - 23192354
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  ||||||| ||||  ||||||||||||||||    
T  23192299 tttgatgataacaaggtattaaaaagtcaattggatatgctaatatttgttcaagt 23192354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23263298 - 23263353
Alignment:
Q  1 tttgatgataacaaggtattaaaagt--tcaattgcatattaatatttgttcaagt 54  Q
    |||||||||||||||||||||||| |  ||||||| ||| ||||||||||||||||    
T  23263298 tttgatgataacaaggtattaaaaattgtcaattggatactaatatttgttcaagt 23263353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24635802 - 24635747
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||| |||||||||||||||||| ||||  ||||||||| ||||||    
T  24635802 tttgatgataacaaagtattaaaagttcaattgaatatactaatatttggtcaagt 24635747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 18790205 - 18790122
Alignment:
Q  131 aacctaattattcacaaaataaattctattgattaacttttcgaaatatcaacaatcccggacaacaacgtcaaaaacttgatg 214  Q
    ||||||||||||||||||||||||  ||  ||||| ||  |||||||||||| |||||  | ||| |||| |||||||||||||    
T  18790205 aacctaattattcacaaaataaatcttacggattatctggtcgaaatatcaataatccatggcaataacgccaaaaacttgatg 18790122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27740281 - 27740227
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaag 53  Q
    ||||| |||||||| |||||||||||||||||| |||  ||||||||||||||||    
T  27740281 tttgaggataacaaagtattaaaagttcaattgaatatgttaatatttgttcaag 27740227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 18790103 - 18790062
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtc 281  Q
    |||| |||||| || |||||||||||||||||||||||||||    
T  18790103 tgcaccaaatcgtatcaagtaataaagtagtaagttatcgtc 18790062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19156637 - 19156581
Alignment:
Q  1 tttgatgataacaaggtattaaaagt-tcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||| | ||||||| ||||  ||||||||||||||||    
T  19156637 tttgatgataacaaggtattaaaattgtcaattggatatgctaatatttgttcaagt 19156581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24646793 - 24646734
Alignment:
Q  1 tttgatgataacaaggtattaaaagt--tcaattgcatat--taatatttgttcaagtat 56  Q
    |||||||||||||||||||||||| |  ||||||| ||||  ||||||||||||||||||    
T  24646793 tttgatgataacaaggtattaaaaattgtcaattggatatgctaatatttgttcaagtat 24646734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22711038 - 22710983
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  ||||||| |||   ||||||||||||||||    
T  22711038 tttgatgataacaaggtattaaaaagtcaattggataagctaatatttgttcaagt 22710983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 21236425 - 21236364
Alignment:
Q  252 taacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  21236425 taacaagtaataaagtaataagttatcgtctccacagaaattgtcgttcaacttagcaatta 21236364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 2352153 - 2352217
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaact 304  Q
    ||||||||||| ||||||||||||||||||||||||||| || |||||   ||||||||||||||    
T  2352153 tgcatcaaatcgtaacaagtaataaagtagtaagttatcatctccacatggattgtcgttcaact 2352217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11571998 - 11572053
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  11571998 tttgatgataacaaggtattaaaagttcaattggatatgctaatatttgttcaagt 11572053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15305008 - 15304953
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  15305008 tttgatgataacaaggtattaaaagttcaattggatatgctaatatttgttcaagt 15304953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24810878 - 24810933
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    |||||||||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  24810878 tttgatgataacaaggtaataaaagttcaattgcatatgttaatatttgttcaagt 24810933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 11466921 - 11466994
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    ||||||||||| ||| |||||||||||||||| ||||| ||| |||||   |||||| ||||||||||||||||    
T  11466921 tgcatcaaatcgtaagaagtaataaagtagtaggttattgtctccacatggattgtcattcaacttagcaatta 11466994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1877963 - 1878018
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||| |||||||||||||||||||| ||||  ||||||||||||||||    
T  1877963 tttgatgataactaggtattaaaagttcaattggatatgctaatatttgttcaagt 1878018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 3401112 - 3401044
Alignment:
Q  246 aaatcataacaagtaataaagtagtaagtt-atcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    ||||| ||||||||||||||||||||| || |||||| ||| |  ||||||||||||||||||||||||    
T  3401112 aaatcgtaacaagtaataaagtagtaattttatcgtctccatatgaattgtcgttcaacttagcaatta 3401044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9396620 - 9396675
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||| ||||| ||||  ||||||||||||||||    
T  9396620 tttgatgataacaaggtattaaaagttgaattggatatgctaatatttgttcaagt 9396675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9763106 - 9763051
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||| |||||||||    
T  9763106 tttgatgataacaaggtattaaaagttcaattggatatgctaatatctgttcaagt 9763051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 2091520 - 2091578
Alignment:
Q  131 aacctaattattcacaaaataaattctattgattaacttttcgaaatatcaacaatccc 189  Q
    |||||| ||||||||||||||||||||  |||||| ||| |||||| ||||||||||||    
T  2091520 aacctagttattcacaaaataaattctgctgattatcttatcgaaacatcaacaatccc 2091578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3778263 - 3778318
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    |||||| |||||||||||||||||||||||||  |||  |||||||||||||||||    
T  3778263 tttgattataacaaggtattaaaagttcaatttgatatgttaatatttgttcaagt 3778318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 4995906 - 4995942
Alignment:
Q  245 caaatcataacaagtaataaagtagtaagttatcgtc 281  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4995906 caaatcataccaagtaataaagtagtaagttatcgtc 4995942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9065899 - 9065844
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattg--catattaatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  |||||||   ||||||||||||||||||||    
T  9065899 tttgatgataacaaggtattaaaatatcaattggatatattaatatttgttcaagt 9065844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9803598 - 9803543
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||||||||  ||||  |||||| |||||||||    
T  9803598 tttgatgataacaaggtattaaaagttcaattagatatgctaatatctgttcaagt 9803543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 16422960 - 16422909
Alignment:
Q  7 gataacaaggtattaaaagttcaattgcatat--taatatttgttcaagtat 56  Q
    ||||||||||||||||||||||||||| ||||  || |||||||||||||||    
T  16422960 gataacaaggtattaaaagttcaattgaatatgctagtatttgttcaagtat 16422909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20598667 - 20598612
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    ||||||||||| |||||||||||| |||||||| |||  |||||||||||||||||    
T  20598667 tttgatgataataaggtattaaaatttcaattggatatgttaatatttgttcaagt 20598612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 10925218 - 10925135
Alignment:
Q  131 aacctaattattcacaaaataaattctattgattaacttttcgaaatatcaacaatcccggacaacaacgtcaaaaacttgatg 214  Q
    ||||||||||||||||||||||||  ||  ||||| ||  |||||||||||| |||||  | ||| |||| |||||||||||||    
T  10925218 aacctaattattcacaaaataaatcttacggattatctggtcgaaatatcaataatccatggcaataacgccaaaaacttgatg 10925135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 12222175 - 12222229
Alignment:
Q  2 ttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||||| ||||| ||||  || |||||||||||||    
T  12222175 ttgatgataacaaggtattaaaagtttaattggatatgctagtatttgttcaagt 12222229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12366448 - 12366505
Alignment:
Q  1 tttgatgataacaaggtattaaaagt--tcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||  ||||||| ||||  ||||||||||||||||    
T  12366448 tttgatgataacaaggtattaaaagttgtcaattgaatatgctaatatttgttcaagt 12366505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 16813330 - 16813276
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaag 53  Q
    |||||||||||||| |||||| ||||||||||| ||||  |||||||||||||||    
T  16813330 tttgatgataacaatgtattacaagttcaattgaatatgctaatatttgttcaag 16813276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 1881393 - 1881347
Alignment:
Q  241 gcatcaaatcataacaagtaataaagtagtaagttatcgtcgccaca 287  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||||    
T  1881393 gcatcaaatcatatcaattaataaagtagtaagttatcttctccaca 1881347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5035767 - 5035714
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaa 52  Q
    ||||||||||||||||||||||||  ||||||| |||  |||||||||||||||    
T  5035767 tttgatgataacaaggtattaaaatgtcaattggatatgttaatatttgttcaa 5035714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 9687103 - 9687169
Alignment:
Q  243 atcaaatcataacaagtaataaagtagtaag-ttatcg-tcgccacagaaattgtcgttcaacttag 307  Q
    |||||||| ||| |||||||||||||||||| |||||| ||  |||| |||||||||||||||||||    
T  9687103 atcaaatcgtaataagtaataaagtagtaagtttatcgttccacacaaaaattgtcgttcaacttag 9687169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 13254008 - 13253950
Alignment:
Q  253 aacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaat 311  Q
    |||||||||||||||||||||||||||||  || |  ||||||| ||||||||| ||||    
T  13254008 aacaagtaataaagtagtaagttatcgtcttcagaagaattgtcattcaacttaacaat 13253950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14114490 - 14114437
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaa 52  Q
    ||||||||||| || |||||||||||||||||| ||||  ||||||||||||||    
T  14114490 tttgatgataaaaacgtattaaaagttcaattggatatgataatatttgttcaa 14114437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14424140 - 14424087
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaa 52  Q
    ||||||||||| || |||||||||||||||||| ||||  ||||||||||||||    
T  14424140 tttgatgataaaaacgtattaaaagttcaattggatatgataatatttgttcaa 14424087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 22334185 - 22334235
Alignment:
Q  255 caagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaactt 305  Q
    |||||||||||||||||||||||| ||  |||| |||||||| ||||||||    
T  22334185 caagtaataaagtagtaagttatcatcttcacataaattgtcattcaactt 22334235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 9071438 - 9071401
Alignment:
Q  238 actgcatcaaatcataacaagtaataaagtagtaagtt 275  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  9071438 actgcatcaaatcgtaacaagtaaaaaagtagtaagtt 9071401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10882872 - 10882928
Alignment:
Q  1 tttgatgataacaaggtattaaaagt-tcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||| | ||||||| ||||  ||||||||||||||||    
T  10882872 tttgatgataacaaggtattaaaattgtcaattggatatgctaatatttgttcaagt 10882928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 10925116 - 10925075
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtc 281  Q
    |||| |||||| || |||||||||||||||||||||||||||    
T  10925116 tgcaccaaatcgtatcaagtaataaagtagtaagttatcgtc 10925075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14304082 - 14304138
Alignment:
Q  1 tttgatgataacaaggtattaaaagt-tcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||| | ||||||| ||||  ||||||||||||||||    
T  14304082 tttgatgataacaaggtattaaaaatgtcaattgaatatgataatatttgttcaagt 14304138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 24469109 - 24469177
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaag-ttatcg-tcgccacagaaattgtcgttcaacttag 307  Q
    |||||||||| |||||||||||||| |||||||| |||||| || ||||||||||| || ||||||||||    
T  24469109 tgcatcaaat-ataacaagtaataaggtagtaagtttatcgttctccacagaaattttcattcaacttag 24469177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 24474057 - 24474125
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaag-ttatcg-tcgccacagaaattgtcgttcaacttag 307  Q
    |||||||||| |||||||||||||| |||||||| |||||| || ||||||||||| || ||||||||||    
T  24474057 tgcatcaaat-ataacaagtaataaggtagtaagtttatcgttctccacagaaattttcattcaacttag 24474125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39284309 - 39284364
Alignment:
Q  1 tttgatgataacaaggtattaaaagt--tcaattgcatat--taatatttgttcaa 52  Q
    ||||||||||||||||||||||||||  ||||||| ||||  ||||||||||||||    
T  39284309 tttgatgataacaaggtattaaaagttgtcaattggatatgctaatatttgttcaa 39284364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 8923216 - 8923256
Alignment:
Q  255 caagtaataaagtagtaagttatcgtcgccacagaaattgt 295  Q
    ||||||||||||||||||||||||||| ||| | |||||||    
T  8923216 caagtaataaagtagtaagttatcgtctccatataaattgt 8923256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 9974326 - 9974230
Alignment:
Q  209 ttgatggaggaaatgtgtaaatattggctactgcatcaaatcataacaagtaataaagtagtaag-ttatcgtcgccacagaaattgtcgttcaact 304  Q
    |||||||| | || |||||||||||  | | |||| |||||  ||||| |||||||||||||||| |||||||  | |||| |||||||||||||||    
T  9974326 ttgatggacggaaggtgtaaatattaacaagtgcaccaaatggtaacatgtaataaagtagtaagtttatcgtttctacaggaattgtcgttcaact 9974230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 21544691 - 21544735
Alignment:
Q  231 attggctactgcatcaaatcataacaagtaataaagtagtaagtt 275  Q
    |||||| | |||| |||||| ||||||||||||||||||||||||    
T  21544691 attggcaagtgcaccaaatcgtaacaagtaataaagtagtaagtt 21544735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23126346 - 23126291
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||  ||||||||||||||||| ||||  ||||| ||||||||||    
T  23126346 tttgatgataacaaaatattaaaagttcaattggatatgctaatagttgttcaagt 23126291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 207
Target Start/End: Original strand, 7779321 - 7779395
Alignment:
Q  133 cctaattattcacaaaataaattctattgattaacttttcgaaatatcaacaatcccggacaacaacgtcaaaaa 207  Q
    |||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||  ||||||||| ||||||    
T  7779321 cctaattattgacaaaataaattctattgattaccttgtcgaaatatcaacaatccccaacaacaacgccaaaaa 7779395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 25189423 - 25189350
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||||||| || ||||||||||||||||  |||||| ||||| ||||||| |||||||||||||||||||||||    
T  25189423 tgcatcaattcgtaacaagtaataaagtgataagttctcgtctccacagagattgtcgttcaacttagcaatta 25189350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 22991549 - 22991622
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||||| |||||||||||||||||||||||||| |||||  | |||||  |||| |||||||||||||||||||    
T  22991549 tgcatctaatcataacaagtaataaagtagtaaattatcaactccacatgaattttcgttcaacttagcaatta 22991622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11514253 - 11514198
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  11514253 tttgatgataacaaggtattaaaagttcaattgaatatgctaatatttgttcaagt 11514198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13932359 - 13932304
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||||||||||||    
T  13932359 tttgatgataacaaggtattaaaagttcaattggatatgttaatatttgttcaagt 13932304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1470172 - 1470117
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||| ||||||||||||||||||| ||||  ||||||||||||||||    
T  1470172 tttgatgataacatggtattaaaagttcaattggatatgctaatatttgttcaagt 1470117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2902947 - 2903002
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||| ||||||||||||||||| ||||  ||||||||||||||||    
T  2902947 tttgatgataacaagatattaaaagttcaattggatatgctaatatttgttcaagt 2903002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7920491 - 7920546
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||    
T  7920491 tttgatgataacaaggtattaaaagttcaattggatatactaatacttgttcaagt 7920546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 8713727 - 8713815
Alignment:
Q  129 ctaacctaattattcacaaaa-taaattctattgattaacttttcgaaatatcaacaatcccggacaacaacgtcaaaaacttgatgga 216  Q
    |||||||||||| |||||||| |||||||||  ||||| ||| ||| ||||||||||||||| |||||  ||| ||||||| |||||||    
T  8713727 ctaacctaattactcacaaaaataaattctaccgattaccttgtcgtaatatcaacaatccccgacaatgacgccaaaaacatgatgga 8713815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 9065614 - 9065702
Alignment:
Q  129 ctaacctaattattcacaaaa-taaattctattgattaacttttcgaaatatcaacaatcccggacaacaacgtcaaaaacttgatgga 216  Q
    |||||||||||| |||||||| |||||||||  ||||| ||| ||| ||||||||||||||| |||||  ||| ||||||| |||||||    
T  9065614 ctaacctaattactcacaaaaataaattctaccgattaccttgtcgtaatatcaacaatccccgacaatgacgccaaaaacatgatgga 9065702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12409598 - 12409649
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttc 50  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  12409598 tttgatgataacaaggtattaaaagttcaattggatatgctaatatttgttc 12409649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17761828 - 17761883
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  17761828 tttgataataacaaggtattaaaagttcaattggatatgataatatttgttcaagt 17761883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19063148 - 19063203
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  19063148 tttgataataacaaggtattaaaagttcaattggatatgataatatttgttcaagt 19063203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19705833 - 19705778
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||| |||||||||||||||||| ||||  ||||||||||||||||    
T  19705833 tttgatgataacaaagtattaaaagttcaattggatatgctaatatttgttcaagt 19705778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27851975 - 27851918
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagtat 56  Q
    |||||||||||||||| |||||||||||||||| ||||  |||||||| |||||||||    
T  27851975 tttgatgataacaaggcattaaaagttcaattggatatactaatattttttcaagtat 27851918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 17768752 - 17768803
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttc 50  Q
    ||||||||||||||| ||||||||||||||||| ||||  ||||||||||||    
T  17768752 tttgatgataacaagatattaaaagttcaattggatatgctaatatttgttc 17768803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19070053 - 19070104
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttc 50  Q
    ||||||||||||||| ||||||||||||||||| ||||  ||||||||||||    
T  19070053 tttgatgataacaagatattaaaagttcaattggatatgctaatatttgttc 19070104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 26420029 - 26419958
Alignment:
Q  243 atcaaatcataacaagtaataaagtagtaagttatc--gtcgccacagaaattgtcgttcaacttagcaatt 312  Q
    |||||||| |||||||||||||| ||||||||||||  ||| ||||| | | ||| ||||||||||||||||    
T  26420029 atcaaatcgtaacaagtaataaaatagtaagttatcgtgtctccacaaagactgttgttcaacttagcaatt 26419958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16304902 - 16304955
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattg--catattaatatttgttcaa 52  Q
    |||||||||||||||||| ||||||||||||||  |||  ||||||||||||||    
T  16304902 tttgatgataacaaggtaataaaagttcaattggacatgctaatatttgttcaa 16304955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 21317761 - 21317704
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagtat 56  Q
    |||||||||||||||||||||||   ||||||| ||||  ||||||||||||||||||    
T  21317761 tttgatgataacaaggtattaaagagtcaattggatatgctaatatttgttcaagtat 21317704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 8839709 - 8839668
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtc 281  Q
    ||||||||| | ||| ||||||||||||||||||||||||||    
T  8839709 tgcatcaaaacgtaataagtaataaagtagtaagttatcgtc 8839668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16658338 - 16658397
Alignment:
Q  1 tttgatgataacaaggtattaaaagt--tcaattgcatat--taatatttgttcaagtat 56  Q
    |||||||||||||||||||||||| |  ||||||| ||||  ||||||||||||||||||    
T  16658338 tttgatgataacaaggtattaaaaattgtcaattggatatgctaatatttgttcaagtat 16658397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19197556 - 19197612
Alignment:
Q  1 tttgatgataacaaggtattaaaagt-tcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||| | ||||||| ||||  ||||||||||||||||    
T  19197556 tttgatgataacaaggtattaaaaatgtcaattggatatgctaatatttgttcaagt 19197612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41495436 - 41495380
Alignment:
Q  1 tttgatgataacaaggtattaaaagt-tcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||| | ||||||| ||||  ||||||||||||||||    
T  41495436 tttgatgataacaaggtattaaaattgtcaattgaatatgctaatatttgttcaagt 41495380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13654369 - 13654314
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  ||||||| ||||  ||||||||||| ||||    
T  13654369 tttgatgataacaaggtattaaaaagtcaattggatatgctaatatttgttgaagt 13654314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13699762 - 13699707
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||| ||||||||  ||||||| ||||  ||||||||||||||||    
T  13699762 tttgatgataacaagatattaaaaagtcaattggatatgctaatatttgttcaagt 13699707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15648163 - 15648108
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||| |||||||||||||||||| |||||||| ||||  ||||||||||| ||||    
T  15648163 tttgacgataacaaggtattaaaaattcaattggatatgctaatatttgtttaagt 15648108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19225851 - 19225796
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||| ||||||| ||||||||| ||||||| ||||  ||||||||||||||||    
T  19225851 tttgatggtaacaagatattaaaagatcaattgaatatgctaatatttgttcaagt 19225796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20418638 - 20418583
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||||| |||||||||||||||  ||||||| ||||  ||||||||||||||||    
T  20418638 tttgatgacaacaaggtattaaaatgtcaattgaatatgctaatatttgttcaagt 20418583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 23420500 - 23420568
Alignment:
Q  245 caaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||||| |||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||    
T  23420500 caaatcgtaacaagtaataaagtagtaagttatcgtctccacaaggattgtcgttcaacttagcaatta 23420568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 33175494 - 33175577
Alignment:
Q  231 attggctactgcatcaaatcataa-caagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||||| | |||| |||||||||| ||||||||||| |||||||||||| || ||||| | |||||||||||||||||||||||    
T  33175494 attggcaagtgcaccaaatcataaacaagtaataaaatagtaagttatcttctccacatagattgtcgttcaacttagcaatta 33175577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 15415893 - 15415963
Alignment:
Q  243 atcaaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    ||||| || ||||||||||||||  |||||||||||||| ||| ||| |||||||||||||||||||||||    
T  15415893 atcaagtcgtaacaagtaataaaacagtaagttatcgtctccatagagattgtcgttcaacttagcaatta 15415963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 25664724 - 25664784
Alignment:
Q  129 ctaacctaattattcacaaaataaattctattgattaacttttcgaaatatcaacaatccc 189  Q
    |||| |||||||||||||||||||||||||  ||||| ||| |||||||||||||||||||    
T  25664724 ctaagctaattattcacaaaataaattctaccgattaccttgtcgaaatatcaacaatccc 25664784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 16478388 - 16478440
Alignment:
Q  4 gatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  16478388 gatgataacaaggtattaaaagttcaattggatatgctaatatttgttcaagt 16478440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 19256834 - 19256891
Alignment:
Q  256 aagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||||||||||||||||||||||||  |||||  |||||||||||||||  |||||||    
T  19256834 aagtaataaagtagtaagttatcgtatccacatgaattgtcgttcaactcggcaatta 19256891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 50048299 - 50048222
Alignment:
Q  231 attggctactgcatcaaatcataacaagtaataaagtagtaag-ttatcg-tcgccacagaaattgtcgttcaactta 306  Q
    |||||| | |||||||||| ||||||||||||||||||||||| |||||| || ||||||  | ||||||||||||||    
T  50048299 attggcaagtgcatcaaattataacaagtaataaagtagtaagtttatcgttctccacagggactgtcgttcaactta 50048222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 14932226 - 14932298
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatt 312  Q
    |||||| |||| ||| || |||||||| |  ||||||||||| ||||| | ||||||||||||||||||||||    
T  14932226 tgcatccaatcgtaaaaaataataaagcacaaagttatcgtctccacaaagattgtcgttcaacttagcaatt 14932298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23918152 - 23918120
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattg 33  Q
    |||||||||||||||||||||||||||||||||    
T  23918152 tttgatgataacaaggtattaaaagttcaattg 23918120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 25132548 - 25132608
Alignment:
Q  129 ctaacctaattattcacaaaa-taaattctattgattaacttttcgaaatatcaacaatcc 188  Q
    |||| |||||||||||||||| ||||||||| |||||| ||| | ||||||||||||||||    
T  25132548 ctaaactaattattcacaaaaataaattctactgattaccttgttgaaatatcaacaatcc 25132608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 31318425 - 31318493
Alignment:
Q  245 caaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    ||||| |||| |||||||||||||||||||||||||| |||||    ||||||||||||  ||||||||    
T  31318425 caaattataataagtaataaagtagtaagttatcgtctccacatggtttgtcgttcaacggagcaatta 31318493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 11768903 - 11768977
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaag-ttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    ||||||||||| ||| ||| |||||||||||||| |||||||| |||||   ||||||||||||| | |||||||    
T  11768903 tgcatcaaatcgtaataaggaataaagtagtaagtttatcgtctccacatggattgtcgttcaacgttgcaatta 11768977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31359723 - 31359670
Alignment:
Q  1 tttgatgataacaaggtatt-aaaagttcaattgcata--ttaatatttgttca 51  Q
    |||||||||||||||||||| ||||||||||||| |||  ||||||||||||||    
T  31359723 tttgatgataacaaggtattaaaaagttcaattgaatatgttaatatttgttca 31359670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1090159 - 1090215
Alignment:
Q  1 tttgatgataacaaggtattaaaagt-tcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||| | ||||||| ||||  ||||||||||||||||    
T  1090159 tttgatgataacaaggtattaaaaatgtcaattggatatgctaatatttgttcaagt 1090215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 13153658 - 13153585
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||| ||||||| |||||||||||||  ||||  |||||||| ||||||  |||||||||||||  ||||||||    
T  13153658 tgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagggattgtcgttcaacgaagcaatta 13153585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 25664823 - 25664868
Alignment:
Q  231 attggctactgcatcaaatcataacaagtaataaagtagtaagtta 276  Q
    |||||| | |||| ||||||||| ||||||||||||||||||||||    
T  25664823 attggcaagtgcaccaaatcatatcaagtaataaagtagtaagtta 25664868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48704662 - 48704606
Alignment:
Q  1 tttgatgataacaaggtattaaaa-gttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  |||||||| ||||  ||||||||||||||||    
T  48704662 tttgatgataacaaggtattaaaattttcaattggatatgctaatatttgttcaagt 48704606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2818978 - 2819033
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    ||||||||||||||  |||||||||| |||||| |||  |||||||||||||||||    
T  2818978 tttgatgataacaaaatattaaaagtccaattggatatgttaatatttgttcaagt 2819033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 17836800 - 17836844
Alignment:
Q  231 attggctactgcatcaaatcataacaagtaataaagtagtaagtt 275  Q
    |||||| | |||| ||||||||||||||||| |||||||||||||    
T  17836800 attggcaagtgcaccaaatcataacaagtaagaaagtagtaagtt 17836844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 21617112 - 21617057
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||| ||||||| |||||||||| ||||||| ||||  ||||||||||||||||    
T  21617112 tttgataataacaaagtattaaaagatcaattgaatatgctaatatttgttcaagt 21617057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25399796 - 25399741
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||| ||||||| |||||||||| ||||  ||||| ||||||||||    
T  25399796 tttgatgataacaaagtattaagagttcaattggatatgctaatacttgttcaagt 25399741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 12563972 - 12564045
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||| ||||||||||||| |||||||||| |||||||||||| | |||  ||||||||||||||||||||||||    
T  12563972 tgcaccaaatcataacaaataataaagtaataagttatcgtctctacatgaattgtcgttcaacttagcaatta 12564045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20237114 - 20237169
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  20237114 tttgatgataacaaggtattaaaagttcaattggatatgctaatatttgttcaagt 20237169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12079275 - 12079219
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagta 55  Q
    ||||||||||||||||||||||||||||||||  ||||  |||||||||||||||||    
T  12079275 tttgatgataacaaggtattaaaagttcaattagatatgctaatatttgttcaagta 12079219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 20695991 - 20695944
Alignment:
Q  257 agtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaact 304  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  20695991 agtaataaagtagtaagttatcgtctccacagggattgtcgttcaact 20695944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 15692760 - 15692824
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaact 304  Q
    |||| ||||| ||| ||||||||||| |||||||||||||||  |||||| |||||| |||||||    
T  15692760 tgcaccaaattatatcaagtaataaaatagtaagttatcgtcttcacagagattgtcattcaact 15692824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 18672418 - 18672473
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    ||||||||||| || |||||||||||||||||| |||  |||||||||||||||||    
T  18672418 tttgatgataaaaaagtattaaaagttcaattgaatatgttaatatttgttcaagt 18672473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 24512826 - 24512758
Alignment:
Q  245 caaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||||| ||| ||||| ||||||||||||||||||||   | ||| |||||||||||||| ||||||||    
T  24512826 caaatcgtaataagtattaaagtagtaagttatcgtctatatagagattgtcgttcaactaagcaatta 24512758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27275922 - 27275976
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaag 53  Q
    |||||||||  |||||||||||||||||||||| ||||  |||||||||||||||    
T  27275922 tttgatgattccaaggtattaaaagttcaattgaatatgctaatatttgttcaag 27275976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 18179415 - 18179377
Alignment:
Q  240 tgcatcaaatcataa-caagtaataaagtagtaagttat 277  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  18179415 tgcatcaaatcataaacaagtaataaagtagtaagttat 18179377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 20101075 - 20101009
Alignment:
Q  240 tgcatcaaatcataa-caagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaactt 305  Q
    ||||||||||||||  ||||||||||||||||||||||| ||| ||| |   |||||||||||||||    
T  20101075 tgcatcaaatcatactcaagtaataaagtagtaagttatagtctccataaggattgtcgttcaactt 20101009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 275
Target Start/End: Complemental strand, 24842991 - 24842962
Alignment:
Q  246 aaatcataacaagtaataaagtagtaagtt 275  Q
    ||||||||||||||||||||||||||||||    
T  24842991 aaatcataacaagtaataaagtagtaagtt 24842962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 11273695 - 11273739
Alignment:
Q  231 attggctactgcatcaaatcataacaagtaataaagtagtaagtt 275  Q
    |||||| | ||||||||||  ||||||||||||||||||||||||    
T  11273695 attggcaagtgcatcaaattgtaacaagtaataaagtagtaagtt 11273739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 18513887 - 18513836
Alignment:
Q  5 atgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||| |||||||| ||||   |||||||||||||||    
T  18513887 atgataacaaggtattaaaaattcaattggatatgcaaatatttgttcaagt 18513836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 22931155 - 22931123
Alignment:
Q  246 aaatcataacaagtaataaagtagtaagttatc 278  Q
    |||||||||||| ||||||||||||||||||||    
T  22931155 aaatcataacaaataataaagtagtaagttatc 22931123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 24518991 - 24518959
Alignment:
Q  243 atcaaatcataacaagtaataaagtagtaagtt 275  Q
    |||||||| ||||||||||||||||||||||||    
T  24518991 atcaaatcgtaacaagtaataaagtagtaagtt 24518959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 26118332 - 26118387
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    |||||||||||||||||||| || ||||||||| |||  |||||| ||||||||||    
T  26118332 tttgatgataacaaggtatttaatgttcaattgaatatgttaataattgttcaagt 26118387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 304
Target Start/End: Complemental strand, 22263681 - 22263586
Alignment:
Q  210 tgatggaggaaatgtgtaaatattggctactgcatcaaatcataacaagtaataaagtagtaag-ttatcgtcgccacagaaattgtcgttcaact 304  Q
    ||||||| |||| |||||||||||||||| || | |||||| ||| ||| |||||||||||||| |||| ||| ||||||| ||||||||||||||    
T  22263681 tgatggacgaaaggtgtaaatattggctagtgtaccaaatcgtaataagcaataaagtagtaagtttattgtctccacagacattgtcgttcaact 22263586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 14758740 - 14758685
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  14758740 tttgatgataacaaggtattaaaagttcaattggatatgctaatatttgttcaagt 14758685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15542341 - 15542286
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  15542341 tttgatgataacaaggtattaaaagttcaattggatattctaatatttgttcaagt 15542286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 16174377 - 16174438
Alignment:
Q  252 taacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||||||||||||||||||| ||||||||  ||||| | ||||| |||||||||||||||||    
T  16174377 taacaagtaataaagtagtaggttatcgtgtccacatagattgttgttcaacttagcaatta 16174438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25596117 - 25596062
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    ||||||||||  |||||||||||||||||||||||||  |||||||||||||||||    
T  25596117 tttgatgatagtaaggtattaaaagttcaattgcatatcttaatatttgttcaagt 25596062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 304
Target Start/End: Complemental strand, 8037104 - 8037023
Alignment:
Q  224 tgtaaatattggctactgcatcaaatcataacaagtaataaagtagtaag-ttatcgtcgccacagaaattgtcgttcaact 304  Q
    ||||||||||||| | ||||  ||||| |||||||||||||||||||||| ||| |||| ||||| | |||||| |||||||    
T  8037104 tgtaaatattggcaagtgcactaaatcgtaacaagtaataaagtagtaagtttaccgtctccacatagattgtcattcaact 8037023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 15320157 - 15320092
Alignment:
Q  210 tgatggaggaaatgtgtaaatattggctactgcatcaaatcataacaagtaataaagtagtaagtt 275  Q
    ||||||| |||| |||||||||||||  | |||| |||||| ||||||| ||||||||||||||||    
T  15320157 tgatggacgaaaggtgtaaatattggaaagtgcaccaaatcgtaacaagcaataaagtagtaagtt 15320092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15477524 - 15477578
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||    
T  15477524 tttgatgataacaaggtattaaaa-ttcaattgaatatgctaatatttgttcaagt 15477578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31719408 - 31719463
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    ||||||||||| ||| ||||||||||||||||| |||  |||||||||||||||||    
T  31719408 tttgatgataataagatattaaaagttcaattgaatatgttaatatttgttcaagt 31719463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 9395440 - 9395514
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaag-ttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||| |||||| ||||||||||| |||||||||| |||||||  |||||   |||||||||||| ||||||||||    
T  9395440 tgcaacaaatcgtaacaagtaatgaagtagtaagtttatcgtaaccacatggattgtcgttcaatttagcaatta 9395514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15552384 - 15552327
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagtat 56  Q
    |||||||| |||||  ||||||||||||||||| ||||  ||||||||||||||||||    
T  15552384 tttgatgacaacaatatattaaaagttcaattgaatatgctaatatttgttcaagtat 15552327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 15576242 - 15576164
Alignment:
Q  231 attggctactgcatcaaatcataacaagtaataaagtagtaag-ttatcg-tcgccacagaaattgtcgttcaacttag 307  Q
    |||||| | ||||||||||| ||||||||||||||||||| || |||||| || || |||  |||||||||||||||||    
T  15576242 attggcaagtgcatcaaatcgtaacaagtaataaagtagtcagtttatcgttctccgcagggattgtcgttcaacttag 15576164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13602618 - 13602562
Alignment:
Q  1 tttgatgataacaaggtattaaaagt-tcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||| | ||||||| ||||  ||||||||||||||||    
T  13602618 tttgatgataacaaggtattaaaattgtcaattggatatgctaatatttgttcaagt 13602562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 20462718 - 20462666
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttca 51  Q
    ||||||||||||||| ||||||||||| ||||| ||||  |||||||||||||    
T  20462718 tttgatgataacaagttattaaaagttgaattggatatgctaatatttgttca 20462666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25592991 - 25592935
Alignment:
Q  1 tttgatgataacaaggtattaaaagt-tcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||| | ||||||| ||||  ||||||||||||||||    
T  25592991 tttgatgataacaaggtattaaaaatatcaattggatatgctaatatttgttcaagt 25592935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 1130643 - 1130607
Alignment:
Q  245 caaatcataacaagtaataaagtagtaagttatcgtc 281  Q
    |||||||||||||||||| |||| |||||||||||||    
T  1130643 caaatcataacaagtaattaagttgtaagttatcgtc 1130607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 15387234 - 15387170
Alignment:
Q  211 gatggaggaaatgtgtaaatattggctactgcatcaaatcataacaagtaataaagtagtaagtt 275  Q
    |||||| |||| |||||||  ||||| | |||| |||||| ||||||| ||||||||||||||||    
T  15387234 gatggacgaaaggtgtaaacgttggcaagtgcaccaaatcgtaacaagcaataaagtagtaagtt 15387170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 17868213 - 17868158
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  | ||||| ||||  ||||||||||||||||    
T  17868213 tttgatgataacaaggtattaaaatgtaaattggatatgctaatatttgttcaagt 17868158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 17877996 - 17877941
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  | ||||| ||||  ||||||||||||||||    
T  17877996 tttgatgataacaaggtattaaaatgtaaattggatatgctaatatttgttcaagt 17877941  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24399113 - 24399058
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  | ||||| ||||  ||||||||||||||||    
T  24399113 tttgatgataacaaggtattaaaaagtgaattggatatgctaatatttgttcaagt 24399058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 23854064 - 23854128
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaact 304  Q
    |||| |||||||||||||||||||||||||||| |||| ||| ||||||  ||||||||||||||    
T  23854064 tgcaccaaatcataacaagtaataaagtagtaaattattgtctccacagggattgtcgttcaact 23854128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19320089 - 19320144
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattg--catattaatatttgttcaagt 54  Q
    |||||||||||||||||||||||||||||||||   |||||||||||| |||||||    
T  19320089 tttgatgataacaaggtattaaaagttcaattgaatatattaatattttttcaagt 19320144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19643375 - 19643430
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||| ||||||||||| ||||  ||||||||||||||||    
T  19643375 tttgatgataacaaggtattacaagttcaattgaatatgctaatatttgttcaagt 19643430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 14962582 - 14962640
Alignment:
Q  255 caagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    ||||||||||||||||||||||| ||   ||||  ||||||||||||||||||||||||    
T  14962582 caagtaataaagtagtaagttattgttttcacatgaattgtcgttcaacttagcaatta 14962640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 18932146 - 18932187
Alignment:
Q  174 aaatatcaacaatcccggacaacaacgtcaaaaacttgatgg 215  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  18932146 aaatatcaacaatccccgacaacaacgccaaaaacttgatgg 18932187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 22524522 - 22524574
Alignment:
Q  4 gatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    ||||||||||||||| |||||||||||||| |||  |||||||||||||||||    
T  22524522 gatgataacaaggtactaaaagttcaattggatatgttaatatttgttcaagt 22524574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33705701 - 33705756
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||||||||||  ||||  ||||||||||| ||||    
T  33705701 tttgatgataacaaggtattaaaagttcaattagatatgctaatatttgtttaagt 33705756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 25461279 - 25461228
Alignment:
Q  254 acaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaactt 305  Q
    |||||||||||||||||||||||||||| ||| |   |||||||||||||||    
T  25461279 acaagtaataaagtagtaagttatcgtctccaaatggattgtcgttcaactt 25461228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 21243418 - 21243360
Alignment:
Q  129 ctaacctaattattcacaaaataaattctattgattaacttttcgaaatatcaacaatc 187  Q
    ||||| |||||||||||||||||||||||| |||||  ||| || ||||||||| ||||    
T  21243418 ctaacttaattattcacaaaataaattctactgattcccttgtcaaaatatcaataatc 21243360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 21841990 - 21842056
Alignment:
Q  209 ttgatggaggaaatgtgtaaatattggctactgcatcaaatcataacaagtaataaagtagtaagtt 275  Q
    |||||||| ||||  ||||||||||||| | ||||  ||||||||| | ||||||||||||||||||    
T  21841990 ttgatggacgaaagatgtaaatattggcaagtgcactaaatcataataggtaataaagtagtaagtt 21842056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15668267 - 15668323
Alignment:
Q  1 tttgatgataacaag-gtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||  |||||||||||||||||| ||||  ||||||||||||||||    
T  15668267 tttgatgataacaaacgtattaaaagttcaattggatatgctaatatttgttcaagt 15668323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 17883470 - 17883532
Alignment:
Q  242 catcaaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaactta 306  Q
    ||||||||| ||||||||||||||||   ||||||||||| ||| |  |||||||||||||||||    
T  17883470 catcaaatcgtaacaagtaataaagt--gaagttatcgtctccatatgaattgtcgttcaactta 17883532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 21243298 - 21243241
Alignment:
Q  256 aagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||||||||||||||||||||||| | ||| | | |||||||||||||| || |||||    
T  21243298 aagtaataaagtagtaagttatcgactccataaacattgtcgttcaactcagtaatta 21243241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22187761 - 22187820
Alignment:
Q  1 tttgatgataacaaggtattaaaagt--tcaattgcatat--taatatttgttcaagtat 56  Q
    |||||||||||||||||||||||| |  ||||||| ||||  ||||||||||||||||||    
T  22187761 tttgatgataacaaggtattaaaaattgtcaattggatatgctaatatttgttcaagtat 22187820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26816359 - 26816307
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttca 51  Q
    ||||||||||||||||||||||||| ||||||  |||  ||||||||||||||    
T  26816359 tttgatgataacaaggtattaaaagatcaattagatatgttaatatttgttca 26816307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 31000648 - 31000579
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaag-ttatc-gtcgccacagaaattgtcgttcaacttag 307  Q
    ||||||||||  |||||||||||||||||||||| |||||  || ||||||  |||||||||||||||||    
T  31000648 tgcatcaaattgtaacaagtaataaagtagtaagtttatcattctccacagggattgtcgttcaacttag 31000579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 33241072 - 33241020
Alignment:
Q  2 ttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaa 52  Q
    ||||||||||||| |||||||||| ||||||| ||||  ||||||||||||||    
T  33241072 ttgatgataacaaagtattaaaagatcaattggatatgctaatatttgttcaa 33241020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 33248993 - 33248941
Alignment:
Q  2 ttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaa 52  Q
    ||||||||||||| |||||||||| ||||||| ||||  ||||||||||||||    
T  33248993 ttgatgataacaaagtattaaaagatcaattggatatgctaatatttgttcaa 33248941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24158283 - 24158228
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  | ||||| ||||  ||||||||||||||||    
T  24158283 tttgatgataacaaggtattaaaatgttaattggatatgctaatatttgttcaagt 24158228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 31275326 - 31275298
Alignment:
Q  253 aacaagtaataaagtagtaagttatcgtc 281  Q
    |||||||||||||||||||||||||||||    
T  31275326 aacaagtaataaagtagtaagttatcgtc 31275298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 313
Target Start/End: Complemental strand, 30797753 - 30797670
Alignment:
Q  231 attggctactgcatcaaatcataacaagtaataaagtagtaag-ttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||||| | ||||||||||| |||||||||||||||||||||| |||||||| | |||   ||||| |||||||||||||||||    
T  30797753 attggcaagtgcatcaaatcgtaacaagtaataaagtagtaagtttatcgtctcaacaaggattgttgttcaacttagcaatta 30797670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 25367770 - 25367697
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||| ||||||  ||||||||||||||||||||||||  ||| |||||  |||||||||||||||||| |||||    
T  25367770 tgcaccaaatcgaaacaagtaataaagtagtaagttacagtctccacatgaattgtcgttcaacttagaaatta 25367697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 19085345 - 19085410
Alignment:
Q  246 aaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    ||||||||||||  ||||||||||||||||| |||| |||||  |||||||||||| |||||||||||    
T  19085345 aaatcataacaa--aataaagtagtaagttaccgtctccacatgaattgtcgttcagcttagcaatta 19085410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20577688 - 20577633
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||    
T  20577688 tttgatgataacaaggtattaaaatttcaattggatatgctaatatttgttcaagt 20577633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 24912163 - 24912223
Alignment:
Q  253 aacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    ||||||||||||||||| |||||||| || ||||| ||||||||||| || ||||||||||    
T  24912163 aacaagtaataaagtagcaagttatcatctccacataaattgtcgtttaaattagcaatta 24912223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 8926487 - 8926421
Alignment:
Q  240 tgcatcaaatcataa-caagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaactt 305  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| ||| ||  |||||||||||||||    
T  8926487 tgcatcaaatcatactcaagtaataaagtagcaagttatcgtctccatagggattgtcgttcaactt 8926421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 10328080 - 10328137
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagtat 56  Q
    ||||||||||||||||||| ||||| ||||||| |||  |||||||||||||||||||    
T  10328080 tttgatgataacaaggtatcaaaagatcaattggatacgttaatatttgttcaagtat 10328137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17812051 - 17812104
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaa 52  Q
    ||||||||||||||||||||||||||||||||| ||||  |||| |||||||||    
T  17812051 tttgatgataacaaggtattaaaagttcaattggatatgctaatgtttgttcaa 17812104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 18778454 - 18778400
Alignment:
Q  129 ctaacctaattattcacaaaataaattctattgattaacttttcgaaatatcaac 183  Q
    ||||||||||||||||||||||||||| || || ||| ||| |||||||||||||    
T  18778454 ctaacctaattattcacaaaataaattatactggttaccttatcgaaatatcaac 18778400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 18446788 - 18446707
Alignment:
Q  133 cctaattattcacaaaataaattctattgattaacttttcgaaatatcaacaatcccggacaacaacgtcaaaaacttgatg 214  Q
    ||||||| |||| ||||||||||||| |||||| ||| ||||||||| ||||||| | ||||||  || | |||||||||||    
T  18446788 cctaattgttcaaaaaataaattctactgattaccttgtcgaaatattaacaatctccgacaaccgcgccgaaaacttgatg 18446707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 22219983 - 22219914
Alignment:
Q  246 aaatcataacaagtaataaagtagtaag-ttatcg-tcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||||||||||||||||||||||||||| |||||| || || || | ||||||||||||||||| |||||    
T  22219983 aaatcataacaagtaataaagtagtaagtttatcgttctccgcaaagattgtcgttcaacttagtaatta 22219914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2652196 - 2652141
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  ||||||| ||||  ||||||||||||||||    
T  2652196 tttgatgataacaaggtattaaaaagtcaattggatatgctaatatttgttcaagt 2652141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14356815 - 14356870
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  ||||||| ||||  ||||||||||||||||    
T  14356815 tttgatgataacaaggtattaaaatgtcaattgaatatgctaatatttgttcaagt 14356870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19818901 - 19818956
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||| ||||||||| ||||||| ||||  ||||||||||||||||    
T  19818901 tttgatgataacaagttattaaaagatcaattggatatgctaatatttgttcaagt 19818956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24619996 - 24619941
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||  ||||||||||||||||| ||||  ||||||||||||||||    
T  24619996 tttgatgataacaaaatattaaaagttcaattggatatactaatatttgttcaagt 24619941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13306691 - 13306745
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaag 53  Q
    |||||||||||||| |||||||||||||||||  ||||  |||||||||||||||    
T  13306691 tttgatgataacaaagtattaaaagttcaattagatatgctaatatttgttcaag 13306745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 19603136 - 19603089
Alignment:
Q  113 aaaacagaaaaataaactaa-cctaattattcacaaa-ataaattcta 158  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||    
T  19603136 aaaacagaaaaataaactaaccctaattattcacaaagataaattcta 19603089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 13553480 - 13553546
Alignment:
Q  243 atcaaatcataacaagtaataaagtagtaag-ttatcg-tcgccacagaaattgtcgttcaacttag 307  Q
    |||||||| ||| |||||||||||||||||| |||||| ||  |||| |||||||||||||||||||    
T  13553480 atcaaatcgtaataagtaataaagtagtaagtttatcgttccacacaaaaattgtcgttcaacttag 13553546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12417260 - 12417316
Alignment:
Q  1 tttgatgataacaaggtattaaaagt-tcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||| | ||||||| ||||  ||||||||||||||||    
T  12417260 tttgatgataacaaggtattaaaaatgtcaattggatatgctaatatttgttcaagt 12417316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 12882123 - 12882164
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtc 281  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||    
T  12882123 tgcattaaaccataacaagtaataaagtattaagttatcgtc 12882164  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 14902149 - 14902197
Alignment:
Q  8 ataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||| |||||||| ||||  ||||||||||||||||    
T  14902149 ataacaaggtattaaaaattcaattggatatgctaatatttgttcaagt 14902197  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2940784 - 2940729
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattg--catattaatatttgttcaagt 54  Q
    ||||||||||||||| ||||||||| |||||||  |||  ||||||||||||||||    
T  2940784 tttgatgataacaagatattaaaagctcaattggacatgctaatatttgttcaagt 2940729  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17526133 - 17526188
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||  |||||||||||||||||||| ||||  |||||| |||||||||    
T  17526133 tttgatgataatgaggtattaaaagttcaattggatatgctaatatgtgttcaagt 17526188  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 18370822 - 18370878
Alignment:
Q  257 agtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    ||||||||||||||||||||||||||| | | | || |||  |||||||||||||||    
T  18370822 agtaataaagtagtaagttatcgtcgctataaagatcgtccatcaacttagcaatta 18370878  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19809909 - 19809964
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||| ||||||| ||||||||| ||||||| ||||  ||||||||||||||||    
T  19809909 tttgatgctaacaagttattaaaagatcaattgaatatactaatatttgttcaagt 19809964  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 20717992 - 20717948
Alignment:
Q  231 attggctactgcatcaaatcataacaagtaataaagtagtaagtt 275  Q
    |||||| | |||| |||||| ||||||||||||||||||||||||    
T  20717992 attggcaagtgcaccaaatcgtaacaagtaataaagtagtaagtt 20717948  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21350269 - 21350324
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  ||||||| ||||  | ||||||||||||||    
T  21350269 tttgatgataacaaggtattaaaatgtcaattggatattctgatatttgttcaagt 21350324  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23088083 - 23088028
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcata--ttaatatttgttcaagt 54  Q
    |||||||||||||| ||||||||  |||||||| |||  |||||||||||||||||    
T  23088083 tttgatgataacaaagtattaaacattcaattgaatatgttaatatttgttcaagt 23088028  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32465721 - 32465753
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattg 33  Q
    |||||||||||||||||||||| ||||||||||    
T  32465721 tttgatgataacaaggtattaatagttcaattg 32465753  T

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Target: scaffold0999 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 2923 - 2850
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagttatcgtcgccacagaaattgtcgttcaacttagcaatta 313  Q
    |||| ||||||| |||||||||||||  ||||  |||||||| ||||||| |||||||||||||  ||||||||    
T  2923 tgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagagattgtcgttcaacgaagcaatta 2850  T

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Target: scaffold0092 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 8495 - 8443
Alignment:
Q  4 gatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||| ||||| ||||  ||||||||||||||||    
T  8495 gatgataacaaggtattaaaagtttaattggatatgctaatatttgttcaagt 8443  T

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Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1559 - 1611
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttca 51  Q
    |||||||||||||| |||||||||||||||||| ||||  |||||||||||||    
T  1559 tttgatgataacaatgtattaaaagttcaattgaatatgctaatatttgttca 1611  T

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Target: scaffold0043; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25353 - 25408
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaatt--gcatattaatatttgttcaagt 54  Q
    |||||||||||||| ||||||| |||||||||  | || |||||||||||||||||    
T  25353 tttgatgataacaatgtattaatagttcaattaggtatgttaatatttgttcaagt 25408  T

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Target: scaffold0772 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 539 - 594
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||| |  ||||||||||||  ||||||||||||||||    
T  539 tttgatgataacaaggtattaatatgtcaattgcatatgctaatatttgttcaagt 594  T

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Target: scaffold0758 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4706 - 4651
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  ||||||| ||||  ||||||||||||||||    
T  4706 tttgatgataacaaggtattaaaaagtcaattggatatgctaatatttgttcaagt 4651  T

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Target: scaffold0522 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3913 - 3968
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  ||||||| ||||  ||||||||||||||||    
T  3913 tttgatgataacaaggtattaaaatgtcaattgaatatgctaatatttgttcaagt 3968  T

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Target: scaffold0522; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11196 - 11251
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  ||||||| ||||  ||||||||||||||||    
T  11196 tttgatgataacaaggtattaaaatgtcaattggatatgctaatatttgttcaagt 11251  T

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Target: scaffold0498 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3000 - 3055
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    |||||| ||||||| |||||||||||||||||| ||||  ||||||||||||||||    
T  3000 tttgataataacaatgtattaaaagttcaattggatatgctaatatttgttcaagt 3055  T

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Target: scaffold0074 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32077 - 32022
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  ||||||| ||||  ||||||||||||||||    
T  32077 tttgatgataacaaggtattaaaaagtcaattggatatgctaatatttgttcaagt 32022  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 11672 - 11621
Alignment:
Q  7 gataacaaggtattaaaagttcaattgcatat--taatatttgttcaagtat 56  Q
    ||||||||||||||||||||||||||| ||||  || |||||||||||||||    
T  11672 gataacaaggtattaaaagttcaattgaatatgctagtatttgttcaagtat 11621  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 112642 - 112587
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  ||||||| ||||  ||||||||||||||||    
T  112642 tttgatgataacaaggtattaaaaagtcaattggatatgctaatatttgttcaagt 112587  T

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Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 116250 - 116195
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||| |||||||| |||||||| ||||  ||||||||||||||||    
T  116250 tttgatgataacaagatattaaaaattcaattggatatgctaatatttgttcaagt 116195  T

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Target: scaffold0386 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 7551 - 7586
Alignment:
Q  240 tgcatcaaatcataacaagtaataaagtagtaagtt 275  Q
    |||| |||||||||||||||||||||||||||||||    
T  7551 tgcaccaaatcataacaagtaataaagtagtaagtt 7586  T

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Target: scaffold0606 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5915 - 5862
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatattaatatttgttcaagt 54  Q
    ||||||||||||||||||||||||| ||| ||   ||||||||||| |||||||    
T  5915 tttgatgataacaaggtattaaaagatcatttatttattaatatttattcaagt 5862  T

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Target: scaffold0411 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12673 - 12617
Alignment:
Q  1 tttgatgataacaaggtattaaaagt-tcaattgcatat--taatatttgttcaagt 54  Q
    |||||||||||||||||||||||| | ||||||| ||||  ||||||||||||||||    
T  12673 tttgatgataacaaggtattaaaattgtcaattggatatgctaatatttgttcaagt 12617  T

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Target: scaffold0490 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7788 - 7733
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  ||||||| ||||  ||||||||||| ||||    
T  7788 tttgatgataacaaggtattaaaatgtcaattggatatgctaatatttgtttaagt 7733  T

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Target: scaffold0351 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8950 - 9005
Alignment:
Q  1 tttgatgataacaaggtattaaaagttcaattgcatat--taatatttgttcaagt 54  Q
    ||||||||||||||||||||||||  ||||||  ||||  ||||||||||||||||    
T  8950 tttgatgataacaaggtattaaaaagtcaattagatatgctaatatttgttcaagt 9005  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 36503 - 36547
Alignment:
Q  231 attggctactgcatcaaatcataacaagtaataaagtagtaagtt 275  Q
    |||||| | |||| ||||||| |||||||||||||||||||||||    
T  36503 attggcaagtgcaccaaatcacaacaagtaataaagtagtaagtt 36547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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