View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2539_low_8 (Length: 254)
Name: NF2539_low_8
Description: NF2539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2539_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 18303723 - 18303486
Alignment:
| Q |
1 |
gcgagcctttgcgaaaatccttgaatgaaacctccggcatcattacatcctttccacgagcattatagcgctggtagagattcggatgtttagagtcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18303723 |
gcgagcctttgcgaaaatccttgaatgaaacctccggcatcattacatcctttccacgagcattatagcgctggtagagattcggatgtttagagtcaaa |
18303624 |
T |
|
| Q |
101 |
ctcaatgaagctagggtgttgaatcttgtacttgattaaggactctacccgattttcaaaaagggagttataaacaaatcgaaacgagaagagtggaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18303623 |
ctcaatgaagctagggtgttgaatcttgtacttgtttaaggactctacccgatattcaaaaagggagttataaacaaatcgaaacgagaagagtggaata |
18303524 |
T |
|
| Q |
201 |
caatgttgggagactaaggcaaagtattggttatgtgg |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18303523 |
caatgttgggagactaaggcaaagtattggttatgtgg |
18303486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 18340132 - 18340214
Alignment:
| Q |
151 |
gattttcaaaaagggagttataaacaaatcgaaacgagaagagtggaatacaatgttgggagactaaggcaaagtattggtta |
233 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||||||| ||||| |||| ||| ||||| || |||| |||||||||||||||| |
|
|
| T |
18340132 |
gatttttaaaaaggtagttataaacgaatcgaaacgacaagagcggaacacagtgttgagaaactagggcaaagtattggtta |
18340214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 18345290 - 18345371
Alignment:
| Q |
151 |
gattttcaaaaagggagttataaacaaatcgaaacgagaagagtggaatacaatgttgggagactaag-gcaaagtattggtt |
232 |
Q |
| |
|
|||||| ||||||| ||||||||| ||| |||| |||||||||||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
18345290 |
gatttttaaaaaggtagttataaatgaattgaaatgagaagagtggaatacaacgttgggaga-taagtgcaaagtattggtt |
18345371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 18339984 - 18340089
Alignment:
| Q |
12 |
cgaaaatccttgaatgaaacctccggcatcattacatcctttccacgagcattatagcgctggtagagattcggatgtttagagtcaaactcaatgaagc |
111 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||| |||| || ||||||||| ||||| |||| |||||||||||||| | |||| || |||||| |||| |
|
|
| T |
18339984 |
cgaaaatcctcaaatggaacctccggcaacataacattctctccacgagcgttataacgctcgtagagattcggatcctcagagagaatctcaataaagc |
18340083 |
T |
|
| Q |
112 |
tagggt |
117 |
Q |
| |
|
|||||| |
|
|
| T |
18340084 |
tagggt |
18340089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 18345142 - 18345197
Alignment:
| Q |
12 |
cgaaaatccttgaatgaaacctccggcatcattacatcctttccacgagcattata |
67 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
18345142 |
cgaaaatcctcaaatggaacctccggcatcattacattctctccacgagcattata |
18345197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University