View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2540_high_1 (Length: 411)
Name: NF2540_high_1
Description: NF2540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2540_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 397
Target Start/End: Original strand, 44693882 - 44694291
Alignment:
| Q |
7 |
aaaatttgtttcataattcgaaattgaaactacttacgctatcagcatcaccaccaccaccctgagattat-------------------atcaatttaa |
87 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
44693882 |
aaaatttctttcagaattcgaaattgaaactacttacgctatcagcatcaccaccacc---ctgagattatcacagaacataatcgttatatcaatttaa |
44693978 |
T |
|
| Q |
88 |
ctatctgtttagttcaaagattccataaccatattcatataatctttaaaaacaatggatactttgtgtttattacaaagtgggattcctggtatagttc |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693979 |
ctatctgtttagttcaaagattccataaccatattcatacaatctttaaaaacaatggttactttgtgtttattacaaagtgggattcctggtatagttc |
44694078 |
T |
|
| Q |
188 |
ctttaatcacttctattactgcaaccactactacttcacgtgccaatgatcacgttcacgtgcatcaatctcacgtaaccacagtgaggcgatcaaacaa |
287 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44694079 |
ctttaatcacttctattagtgcaactactactacttcacgtgccaatgatcacgttcacgtgcatcaatctcacgtaaccacagtgaggcgatcaaacaa |
44694178 |
T |
|
| Q |
288 |
gtcctccatgttttccagattcataggtagctccgccagaaacaattgcctt---gcagtcaacgacgcctttaccgcggagaatgcagacagagctgtg |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
44694179 |
gtcctccatgttttccagattcataggtagctccgccagaaacaattgccttgcagcagtcaacgacgccttcaccgcggagaatgcagacagaactgtg |
44694278 |
T |
|
| Q |
385 |
aaagaaggagatg |
397 |
Q |
| |
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||||||||||||| |
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| T |
44694279 |
aaagaaggagatg |
44694291 |
T |
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