View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2540_high_2 (Length: 356)
Name: NF2540_high_2
Description: NF2540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2540_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 38028612 - 38028784
Alignment:
| Q |
8 |
gagcagagacatcaaggtgagggaaaaatggtgatgctatctaagagtagcacaacaaaaagtttcaatatctgcacaatcttgttgtcgttcatagact |
107 |
Q |
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| T |
38028612 |
gagcagaggcatcaaggtgagggaaaaatagtgatgctatctaagagtagcacaacaaaaagtttcaatatctgcacaatcttgttgtcgttcatagact |
38028711 |
T |
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| Q |
108 |
tattaacactccactctaaaaatggatcagatcaaagagtttttaatggaaacacaaaacaagtaagaaagca |
180 |
Q |
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| T |
38028712 |
tattaacactccactctaaaaatggatcagatcaaagagtttttaatggaaacacaaaacaagtaaggaagca |
38028784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 233 - 356
Target Start/End: Original strand, 38028754 - 38028877
Alignment:
| Q |
233 |
ttaatggaaacacaaaacaactaaggaaccaatgatctcaaaacgatgccatcgcaagcagccaatcactaagattccaccgcataccaccactgtcttc |
332 |
Q |
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| T |
38028754 |
ttaatggaaacacaaaacaagtaaggaagcattgatctcaaaacgatgccatcgcaagcagccaatcactaagattctaccgcataccaccaccgtcttc |
38028853 |
T |
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| Q |
333 |
tgtttttctcatctttatctaacc |
356 |
Q |
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| T |
38028854 |
tgtttttctcatctttatctaacc |
38028877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 31574520 - 31574564
Alignment:
| Q |
265 |
tgatctcaaaacgatgccatcgcaagcagccaatcactaagattc |
309 |
Q |
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| T |
31574520 |
tgatctcaaattgatgccatagcaagcagccaatcactaagattc |
31574564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 356
Target Start/End: Original strand, 31574566 - 31574596
Alignment:
| Q |
326 |
tgtcttctgtttttctcatctttatctaacc |
356 |
Q |
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| T |
31574566 |
tgtcttctgtttttctcatctttatctaacc |
31574596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 15150883 - 15150837
Alignment:
| Q |
181 |
attaagattaaaattaagcaataacaaataacggaaagtgaaaacta |
227 |
Q |
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| T |
15150883 |
attaagattaaaatattgcaataacaaataacagaaagtgaaaacta |
15150837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 6509332 - 6509376
Alignment:
| Q |
265 |
tgatctcaaaacgatgccatcgcaagcagccaatcactaagattc |
309 |
Q |
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| T |
6509332 |
tgatctcaaattgatgccataacaagcagccaatcactaagattc |
6509376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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