View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2540_high_5 (Length: 250)

Name: NF2540_high_5
Description: NF2540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2540_high_5
NF2540_high_5
[»] chr6 (13 HSPs)
chr6 (16-250)||(24751060-24751299)
chr6 (22-127)||(29355853-29355959)
chr6 (23-127)||(12221913-12222019)
chr6 (28-113)||(17432393-17432479)
chr6 (21-118)||(1347004-1347100)
chr6 (40-125)||(7947387-7947472)
chr6 (86-127)||(20400700-20400741)
chr6 (23-118)||(1354756-1354850)
chr6 (90-127)||(1941888-1941925)
chr6 (90-127)||(6024266-6024303)
chr6 (31-126)||(3815084-3815178)
chr6 (92-127)||(8409276-8409311)
chr6 (21-63)||(30786371-30786413)
[»] chr4 (42 HSPs)
chr4 (21-127)||(20639655-20639761)
chr4 (21-127)||(16408598-16408705)
chr4 (21-127)||(23501820-23501927)
chr4 (29-127)||(21489120-21489218)
chr4 (20-128)||(35567202-35567309)
chr4 (22-127)||(13256397-13256503)
chr4 (21-119)||(30639420-30639517)
chr4 (21-127)||(47443990-47444095)
chr4 (40-121)||(20908652-20908733)
chr4 (28-119)||(6430630-6430720)
chr4 (65-127)||(48327804-48327867)
chr4 (21-119)||(36816381-36816479)
chr4 (28-125)||(44363134-44363232)
chr4 (22-119)||(54175104-54175202)
chr4 (22-119)||(5648299-5648395)
chr4 (23-127)||(16911595-16911700)
chr4 (22-127)||(25629082-25629186)
chr4 (42-127)||(39029078-39029163)
chr4 (23-127)||(7038085-7038188)
chr4 (22-118)||(9832311-9832406)
chr4 (23-127)||(14983867-14983970)
chr4 (22-118)||(48598823-48598918)
chr4 (55-126)||(35894492-35894563)
chr4 (28-118)||(20225024-20225113)
chr4 (85-127)||(25343220-25343262)
chr4 (28-118)||(29207902-29207991)
chr4 (21-118)||(11054145-11054241)
chr4 (90-127)||(19027881-19027918)
chr4 (40-120)||(20405127-20405208)
chr4 (39-120)||(30581480-30581561)
chr4 (21-118)||(39077793-39077889)
chr4 (34-127)||(51865048-51865140)
chr4 (28-119)||(7909284-7909375)
chr4 (28-115)||(20225119-20225207)
chr4 (80-127)||(487190-487237)
chr4 (76-127)||(23580259-23580310)
chr4 (90-127)||(17043459-17043496)
chr4 (40-121)||(30690192-30690272)
chr4 (21-118)||(47528527-47528623)
chr4 (45-118)||(49796839-49796911)
chr4 (21-104)||(30352577-30352661)
chr4 (21-61)||(35532090-35532130)
[»] chr1 (42 HSPs)
chr1 (17-127)||(46247946-46248055)
chr1 (21-127)||(18944699-18944807)
chr1 (28-122)||(4349699-4349792)
chr1 (23-127)||(35005179-35005284)
chr1 (23-127)||(10668281-10668386)
chr1 (23-127)||(30395725-30395830)
chr1 (20-127)||(27201703-27201811)
chr1 (28-126)||(19932757-19932856)
chr1 (40-127)||(23768336-23768422)
chr1 (23-118)||(34725097-34725191)
chr1 (28-127)||(46991860-46991958)
chr1 (90-127)||(4430091-4430128)
chr1 (75-120)||(46859129-46859174)
chr1 (44-115)||(15505632-15505702)
chr1 (84-127)||(17470405-17470448)
chr1 (22-120)||(18741955-18742054)
chr1 (23-124)||(20004089-20004191)
chr1 (22-119)||(42304205-42304303)
chr1 (90-127)||(41319871-41319908)
chr1 (21-61)||(1517308-1517348)
chr1 (23-119)||(27474344-27474439)
chr1 (91-127)||(34679285-34679321)
chr1 (33-127)||(35117774-35117870)
chr1 (22-118)||(35253185-35253280)
chr1 (34-125)||(2435796-2435887)
chr1 (23-118)||(19414502-19414596)
chr1 (40-127)||(19701626-19701713)
chr1 (80-127)||(27136707-27136754)
chr1 (28-127)||(39214962-39215061)
chr1 (23-121)||(6983810-6983907)
chr1 (80-127)||(15511204-15511253)
chr1 (21-127)||(23796521-23796626)
chr1 (21-119)||(31382211-31382308)
chr1 (22-120)||(50812003-50812100)
chr1 (22-119)||(6358185-6358282)
chr1 (90-127)||(18724610-18724647)
chr1 (67-120)||(31442432-31442485)
chr1 (21-118)||(45812534-45812630)
chr1 (31-127)||(14617094-14617189)
chr1 (31-119)||(32632564-32632651)
chr1 (44-128)||(44485129-44485212)
chr1 (28-104)||(45402175-45402250)
[»] chr3 (42 HSPs)
chr3 (20-127)||(40272808-40272914)
chr3 (23-127)||(13628789-13628894)
chr3 (28-127)||(45786218-45786318)
chr3 (21-127)||(46421031-46421139)
chr3 (20-127)||(49013469-49013577)
chr3 (21-127)||(13730599-13730706)
chr3 (40-127)||(34420659-34420746)
chr3 (20-127)||(54374341-54374448)
chr3 (22-120)||(54484753-54484850)
chr3 (28-124)||(353353-353450)
chr3 (34-103)||(829452-829521)
chr3 (43-127)||(8247706-8247791)
chr3 (31-127)||(14987012-14987109)
chr3 (23-104)||(25517169-25517249)
chr3 (23-127)||(29366719-29366824)
chr3 (22-127)||(53996563-53996668)
chr3 (28-119)||(22609828-22609918)
chr3 (21-127)||(7943045-7943150)
chr3 (21-119)||(26869769-26869866)
chr3 (28-118)||(31592911-31593000)
chr3 (28-127)||(10795427-10795527)
chr3 (23-127)||(12914034-12914137)
chr3 (80-127)||(55401231-55401278)
chr3 (20-118)||(15797284-15797381)
chr3 (28-118)||(39203578-39203667)
chr3 (90-127)||(9276319-9276356)
chr3 (21-110)||(52926216-52926304)
chr3 (22-118)||(1217152-1217247)
chr3 (90-126)||(4495729-4495765)
chr3 (22-118)||(34771362-34771457)
chr3 (90-125)||(26573184-26573219)
chr3 (28-118)||(22122921-22123010)
chr3 (21-87)||(24851298-24851364)
chr3 (86-120)||(33235594-33235628)
chr3 (20-61)||(4495672-4495713)
chr3 (90-123)||(31904922-31904955)
chr3 (90-127)||(52428542-52428579)
chr3 (90-127)||(54032624-54032661)
chr3 (23-119)||(16735503-16735598)
chr3 (91-127)||(39212045-39212081)
chr3 (21-61)||(40390361-40390401)
chr3 (21-61)||(47624219-47624259)
[»] chr8 (34 HSPs)
chr8 (23-127)||(39460993-39461098)
chr8 (28-126)||(33866983-33867083)
chr8 (20-127)||(35261712-35261818)
chr8 (22-127)||(28817624-28817728)
chr8 (30-127)||(44530182-44530278)
chr8 (23-127)||(36720829-36720932)
chr8 (28-127)||(17823609-17823707)
chr8 (21-127)||(20869956-20870063)
chr8 (23-120)||(12625930-12626026)
chr8 (21-127)||(6760855-6760962)
chr8 (21-127)||(7136524-7136631)
chr8 (80-127)||(14018024-14018071)
chr8 (28-119)||(45071305-45071395)
chr8 (29-127)||(5689664-5689761)
chr8 (30-123)||(16225056-16225150)
chr8 (40-126)||(29877128-29877213)
chr8 (22-127)||(5135288-5135391)
chr8 (22-126)||(25250556-25250661)
chr8 (80-125)||(44742574-44742619)
chr8 (40-127)||(17250891-17250979)
chr8 (28-119)||(13160742-13160832)
chr8 (30-120)||(20284075-20284166)
chr8 (30-120)||(21070703-21070794)
chr8 (21-127)||(8897761-8897866)
chr8 (29-127)||(29521690-29521787)
chr8 (21-118)||(12670247-12670343)
chr8 (22-119)||(18164758-18164854)
chr8 (90-120)||(2626562-2626592)
chr8 (23-120)||(26954173-26954271)
chr8 (21-75)||(27468089-27468143)
chr8 (90-127)||(8484003-8484040)
chr8 (21-118)||(30454094-30454190)
chr8 (28-85)||(36486570-36486627)
chr8 (21-76)||(950591-950646)
[»] chr5 (24 HSPs)
chr5 (21-126)||(24448924-24449028)
chr5 (23-127)||(38879614-38879719)
chr5 (31-127)||(16880654-16880749)
chr5 (43-127)||(27328785-27328870)
chr5 (23-127)||(4619103-4619208)
chr5 (28-127)||(13801771-13801871)
chr5 (28-127)||(20135637-20135737)
chr5 (40-119)||(7097776-7097854)
chr5 (22-120)||(43334243-43334341)
chr5 (23-127)||(28516432-28516536)
chr5 (23-118)||(32703464-32703558)
chr5 (33-127)||(43574639-43574732)
chr5 (40-109)||(12477136-12477205)
chr5 (22-118)||(8169982-8170077)
chr5 (23-127)||(29334428-29334532)
chr5 (28-103)||(12575664-12575739)
chr5 (33-119)||(208936-209022)
chr5 (85-127)||(22187318-22187360)
chr5 (44-126)||(22600488-22600569)
chr5 (85-127)||(42924894-42924936)
chr5 (23-100)||(16957374-16957450)
chr5 (21-118)||(35710353-35710449)
chr5 (23-59)||(39801616-39801652)
chr5 (90-126)||(41425982-41426018)
[»] chr2 (26 HSPs)
chr2 (28-127)||(10543731-10543831)
chr2 (23-127)||(8455315-8455418)
chr2 (21-120)||(10546203-10546301)
chr2 (28-125)||(25632544-25632640)
chr2 (28-127)||(14530351-14530451)
chr2 (23-118)||(9671221-9671315)
chr2 (20-127)||(17623597-17623703)
chr2 (21-118)||(36871534-36871629)
chr2 (40-127)||(19615025-19615112)
chr2 (21-117)||(25249735-25249830)
chr2 (20-127)||(17668035-17668141)
chr2 (23-127)||(24200622-24200727)
chr2 (90-127)||(32781353-32781390)
chr2 (21-119)||(14444769-14444866)
chr2 (34-120)||(26684630-26684715)
chr2 (21-118)||(25641543-25641639)
chr2 (28-120)||(25079721-25079812)
chr2 (77-127)||(7214567-7214618)
chr2 (44-127)||(21377093-21377175)
chr2 (23-118)||(21779260-21779354)
chr2 (34-120)||(17471589-17471675)
chr2 (90-127)||(23145763-23145800)
chr2 (90-127)||(23557553-23557590)
chr2 (23-126)||(5841062-5841166)
chr2 (69-121)||(12315697-12315748)
chr2 (40-120)||(24890451-24890530)
[»] chr7 (36 HSPs)
chr7 (28-127)||(11617592-11617690)
chr7 (21-127)||(7879671-7879776)
chr7 (33-127)||(21566468-21566562)
chr7 (31-124)||(35334823-35334915)
chr7 (22-127)||(42805557-42805663)
chr7 (31-127)||(2541026-2541121)
chr7 (28-127)||(47716492-47716592)
chr7 (48-126)||(14099030-14099107)
chr7 (48-126)||(14409047-14409124)
chr7 (21-123)||(17048812-17048914)
chr7 (85-127)||(22699030-22699072)
chr7 (90-127)||(23419739-23419776)
chr7 (21-118)||(42391097-42391193)
chr7 (67-127)||(16341311-16341371)
chr7 (21-127)||(43557505-43557613)
chr7 (23-118)||(21172008-21172102)
chr7 (34-123)||(14732831-14732920)
chr7 (21-127)||(19426887-19426991)
chr7 (21-118)||(32758301-32758397)
chr7 (22-127)||(42798702-42798806)
chr7 (90-127)||(46354227-46354264)
chr7 (35-127)||(25434052-25434144)
chr7 (43-119)||(38604567-38604642)
chr7 (84-127)||(7644989-7645032)
chr7 (28-126)||(18747520-18747618)
chr7 (23-118)||(31591108-31591202)
chr7 (22-117)||(39093437-39093532)
chr7 (21-127)||(1408490-1408595)
chr7 (22-124)||(13792148-13792250)
chr7 (90-128)||(19266482-19266520)
chr7 (18-104)||(27889310-27889395)
chr7 (21-119)||(34626205-34626302)
chr7 (93-127)||(35203472-35203506)
chr7 (28-118)||(48735126-48735215)
chr7 (22-127)||(27629667-27629771)
chr7 (21-61)||(36602545-36602585)
[»] scaffold0057 (2 HSPs)
scaffold0057 (21-127)||(24769-24874)
scaffold0057 (21-127)||(46864-46969)
[»] scaffold0049 (1 HSPs)
scaffold0049 (28-127)||(59010-59110)
[»] scaffold0311 (1 HSPs)
scaffold0311 (29-127)||(10843-10940)
[»] scaffold0015 (1 HSPs)
scaffold0015 (23-118)||(48633-48727)
[»] scaffold0168 (1 HSPs)
scaffold0168 (22-118)||(30619-30714)
[»] scaffold0187 (2 HSPs)
scaffold0187 (28-118)||(10054-10143)
scaffold0187 (28-118)||(20382-20471)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 24751060 - 24751299
Alignment:
Q  16 atagtaaaaaatggcaacccggttcactaaagctcct-----gcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttac 110  Q
    ||||||||||||||||||||||| |||||||||| ||     ||||||||||| |||| ||||  |||||||||||||||||||||||||||||||||||    
T  24751060 atagtaaaaaatggcaacccggtgcactaaagctgctcatacgcatacgcacggttcgtgaaggggtctcaccattttagtgtattgtacgcagtcttac 24751159  T
Q  111 cctgttttttacacaagtaataaaaagaattaaatttgtatttagtctcagcaaaatgtaaaatagtttattgattttatccgttctataggtgattgat 210  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24751160 cctattttttacacaagtaataaaaagaattaaatttgtatttagtctcagcaaaatgtaaaatagtttattgattttatccgttctataggtgattgat 24751259  T
Q  211 agacatacttttatcaaattgctatatacaaaaactttaa 250  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  24751260 agacatacttttatcaaatttctatatacaaaaactttaa 24751299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 29355853 - 29355959
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||||| || ||||||||||||||| |||||||||||| ||    
T  29355853 aaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgtttctt 29355952  T
Q  121 acacaag 127  Q
    |||||||    
T  29355953 acacaag 29355959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 12221913 - 12222019
Alignment:
Q  23 aaaatggcaacccggttcactaaa-gctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||| ||||||||||| ||||||| ||||| ||||||||| | | |||||||  ||| ||||||| || ||||||||||||||| |||||||||||||||    
T  12221913 aaaagggcaacccggtgcactaaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgtttttt 12222012  T
Q  121 acacaag 127  Q
    |||||||    
T  12222013 acacaag 12222019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 17432479 - 17432393
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcacca-ttttagtgtattgtacgcagtcttaccct 113  Q
    ||||||||||| |||||||||||| |||| | || ||| |||||| | ||||||||| |||||||||||||||| ||| ||||||||    
T  17432479 ggcaacccggtgcactaaagctcccgcatgcacaggatccgggaaaaggtctcaccatttttagtgtattgtacacagccttaccct 17432393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 1347100 - 1347004
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  1347100 aaaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 1347004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 7947387 - 7947472
Alignment:
Q  40 cactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacaca 125  Q
    ||||||||||||  |||||||| | | |||||||  | | ||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  7947387 cactaaagctcccacatacgcaaggtccgggaagggggcccaccattttggtgtattgtacgcagccttaccctggtttttacaca 7947472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 20400741 - 20400700
Alignment:
Q  86 tttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  20400741 tttagtgtactgtacgcagtcttaccctgttttttacacaag 20400700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 1354756 - 1354850
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  1354756 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 1354850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 1941925 - 1941888
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  1941925 gtgtattgtacgcagccttaccctgttttttacacaag 1941888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 6024303 - 6024266
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||||||||||||||||| |||||||||||||||    
T  6024303 gtgtattgtacgcagtcttaccatgttttttacacaag 6024266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 3815084 - 3815178
Alignment:
Q  31 aacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    |||||||| |||||||||| | ||||||| | | ||||||||   ||| ||||||||  ||||||||||||||||| |||| | ||||||||||||    
T  3815084 aacccggtgcactaaagcttccgcatacgtagggttcgggaaagggtcccaccatttg-gtgtattgtacgcagtcgtaccatattttttacacaa 3815178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 8409311 - 8409276
Alignment:
Q  92 gtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||| ||||||||||||||||||||||    
T  8409311 gtattgtacgcagccttaccctgttttttacacaag 8409276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 30786371 - 30786413
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacg 63  Q
    |||||| ||||||||||| |||||||||||| |||||||||||    
T  30786371 aaaaaaaggcaacccggtgcactaaagctcccgcatacgcacg 30786413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 20639655 - 20639761
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||||||| ||||||||||||||| |||||||||||||||    
T  20639655 aaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattttggtgtattgtacgcagccttaccctgtttttt 20639754  T
Q  121 acacaag 127  Q
    |||||||    
T  20639755 acacaag 20639761  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 16408598 - 16408705
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||| ||||||||||| |||||||||||| ||||| ||  | | |||||||  ||  ||||||| || ||||||||||||||||||||||||||||||    
T  16408598 aaaaaagggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggttccaccattattggtgtattgtacgcagtcttaccctgttttt 16408697  T
Q  120 tacacaag 127  Q
    ||||||||    
T  16408698 tacacaag 16408705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 23501927 - 23501820
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||| ||||||||||| |||||||||||| ||||| ||| | | |||||||  ||| ||||||| || ||||||||||||||  ||||||||||||||    
T  23501927 aaaaaagggcaacccggtgcactaaagctcccgcatatgcagggtccgggaaggggtcccaccattattggtgtattgtacgcaaccttaccctgttttt 23501828  T
Q  120 tacacaag 127  Q
    ||||||||    
T  23501827 tacacaag 23501820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 21489218 - 21489120
Alignment:
Q  29 gcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||| || ||| |||||||| ||||||||| | |||||||||  ||| ||||||||| ||| ||||||||||||||||| ||||||||||| ||||    
T  21489218 gcaacccagtgcacgaaagctcccgcatacgcagggttcgggaaggggtcccaccattttggtgcattgtacgcagtcttactctgttttttacgcaag 21489120  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 35567309 - 35567202
Alignment:
Q  20 taaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||||| |||| |||||| |||||||||||| ||| ||||| | |||||||||  ||| ||||| ||| |||| |||||| ||| ||||||||||||||    
T  35567309 taaaaaagggcagcccggtgcactaaagctcccgcagacgcagggttcgggaaggggtcccacca-tttggtgtgttgtacacagccttaccctgttttt 35567211  T
Q  120 tacacaagt 128  Q
    |||||||||    
T  35567210 tacacaagt 35567202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 13256397 - 13256503
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||| ||||||||||| |||||||||||| ||| | ||  | |||||||||  ||| ||| ||| || ||||||||||||||| |||||||||||||||    
T  13256397 aaaaagggcaacccggtgcactaaagctcccgcagatgcggggttcgggaaggggtcccactattattggtgtattgtacgcagccttaccctgtttttt 13256496  T
Q  121 acacaag 127  Q
    |||||||    
T  13256497 acacaag 13256503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 30639517 - 30639420
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||| |||||||| || |||||||||||| ||||| ||| | | |||||||  ||||||||| ||| ||||||||||||||| ||||||||||||||    
T  30639517 aaaaaagggcaacccagtgcactaaagctcccgcatatgcagggtccgggaaggggtctcacca-tttggtgtattgtacgcagccttaccctgttttt 30639420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 47444095 - 47443990
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||| |||||||| || |||| ||||||||||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||||    
T  47444095 aaaaaagggcaacccagtgcactgaagctcctgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttttt 47443997  T
Q  121 acacaag 127  Q
    || ||||    
T  47443996 acgcaag 47443990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 20908652 - 20908733
Alignment:
Q  40 cactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    |||||||||||| ||||||||| | |||||||||  ||| ||||||||| ||||||||||||||| |||||| | |||||||    
T  20908652 cactaaagctcccgcatacgcagggttcgggaaggggtcccaccattttggtgtattgtacgcagccttaccttctttttta 20908733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 6430630 - 6430720
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||||||||| | |||||||||| ||||||||| | | |||||||  ||| ||||||||  ||||||||||||||| ||||||||||||||    
T  6430630 ggcaacccggtgcgctaaagctcccgcatacgcagggtccgggaagtggtcccaccatttg-gtgtattgtacgcagccttaccctgttttt 6430720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 48327804 - 48327867
Alignment:
Q  65 ttcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||||| ||| ||||||| || |||||||||| |||||||||||||||||||||||||||    
T  48327804 ttcgggaagaggtcccaccattattggtgtattgtatgcagtcttaccctgttttttacacaag 48327867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 36816381 - 36816479
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||| ||||||||||| |||||||||||| |||||| || | | | ||||| |||| |||| |||| ||||||||||||||| | | ||||||||||    
T  36816381 aaaaaagggcaacccggtacactaaagctcccgcatacacagggtccaggaaggagtcccacctttttggtgtattgtacgcagccctgccctgttttt 36816479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 44363134 - 44363232
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcacca-ttttagtgtattgtacgcagtcttaccctgttttttacaca 125  Q
    ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||| |||| |||  |||||||||| | ||||||||||||||||||    
T  44363134 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatttttggtgcgttgtacgcagccctaccctgttttttacaca 44363232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 54175202 - 54175104
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcggg-aagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||| |||| |||||| |||||||||||| ||||| ||| | | |||| |||  ||| ||||||||| ||||||||||||||| ||||||||||||||    
T  54175202 aaaaagggcagcccggtgcactaaagctcccgcatatgcagggtccggggaaggggtcccaccattttggtgtattgtacgcagccttaccctgttttt 54175104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 5648395 - 5648299
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||| |||||||| || |||| ||||||| ||||||||| | | |||||||  ||| ||||||||  ||||||||||||||| ||||||||||||||    
T  5648395 aaaaagggcaacccagtgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgttttt 5648299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 16911700 - 16911595
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    |||| |||||||||||  ||||||||||| || |||||| | | |||||||  ||| ||||||| || ||||||||||||||| ||||||||| ||| ||    
T  16911700 aaaagggcaacccggtaaactaaagctcccgcgtacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgatttgta 16911601  T
Q  122 cacaag 127  Q
    ||||||    
T  16911600 cacaag 16911595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 25629186 - 25629082
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    ||||| ||||||||||| |||||||||||| ||||| | | | | |||||||  ||| ||||||||  ||||||||||| ||| |||||||| |||||||    
T  25629186 aaaaagggcaacccggtgcactaaagctcccgcatatgtagggtccgggaaggggtcccaccatttg-gtgtattgtacacagccttaccctatttttta 25629088  T
Q  122 cacaag 127  Q
    ||||||    
T  25629087 cacaag 25629082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 39029078 - 39029163
Alignment:
Q  42 ctaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||||| ||||| ||| | | ||| |||  ||| ||||||||| ||||||||||| ||| ||||||||||||||||||||||    
T  39029078 ctaaagctcccgcatatgcagggtccggaaagtggtcccaccattttcgtgtattgtacacagccttaccctgttttttacacaag 39029163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 7038188 - 7038085
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttac 122  Q
    |||| |||||||| || |||||||||||| | ||||||| | | |||| ||  | | ||||||||| |||||||||||| ||||||||||| ||||||||    
T  7038188 aaaagggcaacccagtgcactaaagctcc-gtatacgcagggtccgggtaggtgccccaccattttggtgtattgtacgaagtcttaccctattttttac 7038090  T
Q  123 acaag 127  Q
    |||||    
T  7038089 acaag 7038085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 9832311 - 9832406
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||| ||||||||||| ||||| || ||||||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  9832311 aaaaagggcaacccggtgcactagagttcctgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 9832406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 14983970 - 14983867
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttac 122  Q
    |||| ||||||  ||| |||||||||||| ||||||||| | | |||||||  ||| |||||||| ||||||||||| |||  |||||||| ||||||||    
T  14983970 aaaagggcaacatggtacactaaagctcccgcatacgcagggtccgggaaggggtcccaccattt-agtgtattgtaggcaaccttaccctattttttac 14983872  T
Q  123 acaag 127  Q
    |||||    
T  14983871 acaag 14983867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 48598823 - 48598918
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  48598823 aaaaagggcaacccggtgcactagagctccggcatatgcatggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 48598918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 35894492 - 35894563
Alignment:
Q  55 atacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    ||||||| ||| |||||||  ||| ||||||||| ||||||||||||||  |||||| ||||||||||||||    
T  35894492 atacgcatgatccgggaaggggtcccaccattttggtgtattgtacgcacacttaccgtgttttttacacaa 35894563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 20225113 - 20225024
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  20225113 ggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 20225024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 25343262 - 25343220
Alignment:
Q  85 ttttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  25343262 ttttggtgtattgtacgcagccttaccctgttttttacacaag 25343220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 29207902 - 29207991
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  29207902 ggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 29207991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 11054145 - 11054241
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||  | ||||||  |||||||||||||||||||||||||||||    
T  11054145 aaaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggttccgccatttg-gtgtattgtacgcagtcttaccctgtttt 11054241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 19027918 - 19027881
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  19027918 gtgtattgtacgcagccttaccctgttttttacacaag 19027881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 20405208 - 20405127
Alignment:
Q  40 cactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||||||||| ||||| ||  | | |||||||  ||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  20405208 cactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattagtgtattgtacgcaatcttaccctgtttttt 20405127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 30581480 - 30581561
Alignment:
Q  39 tcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||||||||||| |||| ||| | | |||||||  ||| ||||||||| ||||||||||| ||  |||||||||||||||    
T  30581480 tcactaaagctcctacatatgcagggtccgggaaggggtcccaccattttggtgtattgtacacacccttaccctgtttttt 30581561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 39077793 - 39077889
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| ||||||||||| ||||| |||||| ||||| ||| | | ||| |||| ||||||||| ||| || |||||||||||  |||||||||||||    
T  39077793 aaaaaaaggcaacccggtgcactagagctcccgcatatgcagggtccggaaagatgtctcacca-tttggtatattgtacgcaaccttaccctgtttt 39077889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 51865048 - 51865140
Alignment:
Q  34 ccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||| || ||||||||| ||||||||| | | |||||||  | | ||||||||  ||||||||||||||| |||||| |||||||||||||||    
T  51865048 ccggtgcaataaagctcccgcatacgcagggtccgggaaggggccccaccatttg-gtgtattgtacgcagccttaccatgttttttacacaag 51865140  T

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Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 7909284 - 7909375
Alignment:
Q  28 ggcaacccggttcactaaagctcct-gcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||||||| | ||||||||||||  ||||||||| | |||||||||  ||| ||||||||  ||||||||||||||  ||||||||||||||    
T  7909284 ggcaacccgatgcactaaagctccccgcatacgcagggttcgggaaggggtcccaccatttg-gtgtattgtacgcaaccttaccctgttttt 7909375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 20225207 - 20225119
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgt 115  Q
    ||||||||||| |||||||||||| ||||| ||  | | |||||||  ||| ||||||| || ||||||||||||||| ||||||||||    
T  20225207 ggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgt 20225119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 487190 - 487237
Alignment:
Q  80 caccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||||||||||||||||||||  ||||| |||||| ||||||||    
T  487190 caccattttagtgtattgtacgcagctttaccttgttttatacacaag 487237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 23580259 - 23580310
Alignment:
Q  76 gtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||| ||||||| ||||||  ||||||||||| ||||||||||||||||||    
T  23580259 gtctcgccattttggtgtatcctacgcagtcttcccctgttttttacacaag 23580310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 17043459 - 17043496
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  17043459 gtgtattgtacgcagccttaccctgtattttacacaag 17043496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 30690192 - 30690272
Alignment:
Q  40 cactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    |||||||||||| ||||||||| | | |||||||  ||| ||||| ||  |||||||||| |||| ||||||||||||||||    
T  30690192 cactaaagctcccgcatacgcagggtccgggaaggggtcccaccaattg-gtgtattgtatgcagccttaccctgtttttta 30690272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 47528527 - 47528623
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| ||||||||||| ||||| ||||||  ||||  || | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  47528527 aaaaaagggcaacccggtgcactagagctcccacatattcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 47528623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 49796911 - 49796839
Alignment:
Q  45 aagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||||| ||||||||| | |||||||||  ||| ||||||||  ||||||||||||||| |||||| ||||||    
T  49796911 aagctcccgcatacgcagggttcgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccatgtttt 49796839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 30352577 - 30352661
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcacca-ttttagtgtattgtacgcag 104  Q
    |||||| |||||| |||| |||||||||||| ||||||||| | | || ||||  ||| ||||| |||| |||||||||||||||    
T  30352577 aaaaaagggcaacacggtgcactaaagctcccgcatacgcagggtccgagaaggggtcccaccatttttggtgtattgtacgcag 30352661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 35532130 - 35532090
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgca 61  Q
    |||||| ||||||||||| |||||||||||| |||||||||    
T  35532130 aaaaaagggcaacccggtgcactaaagctcccgcatacgca 35532090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 46247946 - 46248055
Alignment:
Q  17 tagtaaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtt 116  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||||||  |||||||||||||||||||||||||||    
T  46247946 tagtaaaaaagggcaacccggtacactaaagctcccgcatacgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagtcttaccctgtt 46248044  T
Q  117 ttttacacaag 127  Q
    |||||||||||    
T  46248045 ttttacacaag 46248055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 18944807 - 18944699
Alignment:
Q  21 aaaaaatggcaacccggttcactaaa-gctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| ||||||||||| ||||||| ||||| ||||||||| | | |||||||  ||| ||||||| || ||||||||||||||| |||||||||||||    
T  18944807 aaaaaagggcaacccggtgcactaaaagctcccgcatacgcagggtccgggaaggggtcccaccattgttggtgtattgtacgcagccttaccctgtttt 18944708  T
Q  119 ttacacaag 127  Q
    |||||||||    
T  18944707 ttacacaag 18944699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 4349792 - 4349699
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttac 122  Q
    ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||||||    
T  4349792 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgttttttac 4349699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 35005284 - 35005179
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttag-tgtattgtacgcagtcttaccctgtttttta 121  Q
    |||| ||||||||||| ||||||||| || ||||||||| | | |||||||  ||| ||||||||| | ||||||||| |||| ||||||||||||||||    
T  35005284 aaaagggcaacccggtgcactaaagcgcccgcatacgcagggtccgggaaggggtcccaccatttttggtgtattgtatgcagccttaccctgtttttta 35005185  T
Q  122 cacaag 127  Q
    ||||||    
T  35005184 cacaag 35005179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 10668386 - 10668281
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    |||| ||||||||||| |||||||||||| ||||||||| |   |||||||  ||| ||||||| || ||||||||||||||  |||||| |||||||||    
T  10668386 aaaagggcaacccggtgcactaaagctcccgcatacgcagggaccgggaaggggtcccaccattattggtgtattgtacgcaaccttaccttgtttttta 10668287  T
Q  122 cacaag 127  Q
    ||||||    
T  10668286 cacaag 10668281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 30395725 - 30395830
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    |||| |||||| |||| |||||||||||| ||||| ||  | | |||||||  ||| ||||||| || ||||||||||||||| ||||||||||||||||    
T  30395725 aaaagggcaactcggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgtttttta 30395824  T
Q  122 cacaag 127  Q
    ||||||    
T  30395825 cacaag 30395830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 27201811 - 27201703
Alignment:
Q  20 taaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttag-tgtattgtacgcagtcttaccctgtttt 118  Q
    ||||||| ||||||||  | |||||||||||| ||||||||| | | |||||||  ||| ||||||||| | |||||||||||||| ||||||||||||     
T  27201811 taaaaaagggcaacccaatgcactaaagctcccgcatacgcaaggtccgggaaggggtcccaccatttttggtgtattgtacgcagccttaccctgtttc 27201712  T
Q  119 ttacacaag 127  Q
    | |||||||    
T  27201711 tgacacaag 27201703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 19932757 - 19932856
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttag-tgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    ||||||| ||| |||||| | || |||||||||| | | |||||||  ||| ||||||||| | |||||||||||||| |||||||||||||||||||||    
T  19932757 ggcaacctggtgcactaatgatcttgcatacgcagggtccgggaaggggtcccaccatttttggtgtattgtacgcagccttaccctgttttttacacaa 19932856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 23768336 - 23768422
Alignment:
Q  40 cactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||||||| ||||||||| | |  ||||||  ||| ||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  23768336 cactaaagctcccgcatacgcagggtctgggaaggtgtcccaccatttg-gtgtattgtacgcagccttaccctgttttttacacaag 23768422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 34725097 - 34725191
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| |||||||| |||||||||||||||| |||||||||||||    
T  34725097 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccattt-agtgtattgtacgcagccttaccctgtttt 34725191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 46991958 - 46991860
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||| ||||||||||||  |||||||| | | |||||||  ||| |||||||   ||||||||||| ||| ||||||||||||||||||||||    
T  46991958 ggcaacccggtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccattcg-gtgtattgtacacagccttaccctgttttttacacaag 46991860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 4430091 - 4430128
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4430091 gtgtattgtacgcagtcttaccctgttttttacacaag 4430128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 46859174 - 46859129
Alignment:
Q  75 agtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||    
T  46859174 agtcccaccattttggtgtattgtacgcagtcttaccctgtttttt 46859129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 15505702 - 15505632
Alignment:
Q  44 aaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgt 115  Q
    |||||||| ||||||||| | |||||||||  ||| ||||||||  ||||||||||||||||||||||||||    
T  15505702 aaagctcccgcatacgcagggttcgggaaggggtcccaccatttg-gtgtattgtacgcagtcttaccctgt 15505632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 17470405 - 17470448
Alignment:
Q  84 attttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||    
T  17470405 attttggtgtattgtacgcagccttaccctgttttttacacaag 17470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 18741955 - 18742054
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttag-tgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||| || |||||||| |||||||||||  ||||||||| | |  ||||||  ||| ||||||||| | |||||||||||||| |||||||||||||||    
T  18741955 aaaaagggaaacccggtgcactaaagctctcgcatacgcagggtctgggaaggggtcccaccatttttggtgtattgtacgcagccttaccctgtttttt 18742054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 20004089 - 20004191
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    |||| ||||||||||| |||||||||||| ||||| ||  | |  ||||||  ||| ||||||| || ||||||||||||||| |||||| |||||||||    
T  20004089 aaaagggcaacccggtgcactaaagctcccgcatatgcggggtctgggaaggggtcccaccattattggtgtattgtacgcagccttaccttgtttttta 20004188  T
Q  122 cac 124  Q
    |||    
T  20004189 cac 20004191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 42304205 - 42304303
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcacca-ttttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||| ||||| ||||| ||||||||||||  |||||||| | | |||||||  ||| ||||| |||| ||||||||||||||  ||||||||||||||    
T  42304205 aaaaagggcaatccggtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccattttttgtgtattgtacgcaaccttaccctgttttt 42304303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 41319871 - 41319908
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  41319871 gtgtattgtacgcagccttaccctgttttttacacaag 41319908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 1517308 - 1517348
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgca 61  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  1517308 aaaaaagggcaacccggtgcactaaagctcctgcatacgca 1517348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 27474439 - 27474344
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||| ||||| ||||| |||||||||||| ||||||||| | | |||||||  ||| ||||| || ||||||||||||||||  || ||||||||||    
T  27474439 aaaagggcaatccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca-ttcagtgtattgtacgcagctttgccctgttttt 27474344  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 34679285 - 34679321
Alignment:
Q  91 tgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||| |||||||||||||||||||||||||||||||    
T  34679285 tgtatagtacgcagtcttaccctgttttttacacaag 34679321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 35117774 - 35117870
Alignment:
Q  33 cccggttcactaaagctcctgcat-acgcacgattcgggaagaagtctcaccattttag-tgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||| ||||||||||||||||| ||||| | | |||||||  ||| || |||||| | |||||||||| ||| |||||||||| |||||||||||    
T  35117774 cccggtgcactaaagctcctgcattacgcagggtccgggaaggggtcccatcatttttggtgtattgtacacagccttaccctgtattttacacaag 35117870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 35253185 - 35253280
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||| ||||| ||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  35253185 aaaaagggcaatccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 35253280  T

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Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 2435796 - 2435887
Alignment:
Q  34 ccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacaca 125  Q
    ||||| |||||||||||| |||| || | | | ||| |||  ||| ||||||||| ||||||||||||||| |||||||| ||||| |||||    
T  2435796 ccggtgcactaaagctcccgcatgcggagggtacggaaaggggtcccaccattttggtgtattgtacgcaggcttaccctatttttcacaca 2435887  T

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Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 19414596 - 19414502
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||| ||||||||    
T  19414596 aaaagggcaacccggtgcactagagctcccgcatatgcagggtacgggaaggggtcccaccatttg-gtgtattgtacgcagccttaacctgtttt 19414502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 19701713 - 19701626
Alignment:
Q  40 cactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||||||| ||||||||| | | |||||||  | | ||||||||| ||||||||||| ||  ||||||  ||||||||||||||    
T  19701713 cactaaagctcccgcatacgcagggtccgggaaggggccccaccattttggtgtattgtacccatccttaccaagttttttacacaag 19701626  T

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Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 27136707 - 27136754
Alignment:
Q  80 caccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||| ||||||||||||||  |||||| |||||||||||||||    
T  27136707 caccattttggtgtattgtacgcaaccttaccatgttttttacacaag 27136754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 39214962 - 39215061
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||| |||||| |||||||||| |  |||||||| | || ||||||  | | ||||||||| |  |||||||||||| ||||||| ||||||||||||||    
T  39214962 ggcagcccggtgcactaaagcttccacatacgcagggtttgggaaggggacccaccattttggaatattgtacgcagccttacccagttttttacacaag 39215061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 6983810 - 6983907
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    |||| |||| |||||| ||| ||||||||||| |||||| | | ||| |||  ||| ||||||||  ||||||||||||||  ||||||||||||||||    
T  6983810 aaaagggcagcccggtgcaccaaagctcctgcctacgcagggtccggaaaggggtcccaccatttg-gtgtattgtacgcatacttaccctgtttttta 6983907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 15511204 - 15511253
Alignment:
Q  80 caccattttagtgtattgta--cgcagtcttaccctgttttttacacaag 127  Q
    ||||||||| ||||||||||  ||||| ||||||||||||||||||||||    
T  15511204 caccattttggtgtattgtatccgcagccttaccctgttttttacacaag 15511253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 23796626 - 23796521
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||| |||| |||||| |||||||||||| ||||| ||| | |  ||||||  ||||||||| ||| ||||||||||||||  |||||  || |||||    
T  23796626 aaaaaagggcagcccggtgcactaaagctccagcatatgcagggtctgggaaggggtctcacca-tttggtgtattgtacgcaaccttacattgattttt 23796528  T
Q  121 acacaag 127  Q
    |||||||    
T  23796527 acacaag 23796521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 31382211 - 31382308
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||| ||||||||||| || ||||||||| ||||| ||| | | | |||||  ||| ||||||||  ||||||||||||||| |||| |||||||||    
T  31382211 aaaaaagggcaacccggtacagtaaagctcccgcatatgcagggtccaggaaggggtcccaccatttg-gtgtattgtacgcagccttatcctgttttt 31382308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 50812100 - 50812003
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||| |||| ||| || || ||||||||| ||||||||| |   |||||||  ||| ||||||||| ||||||||||||||  |||||||||||||||    
T  50812100 aaaaagggcagcccagtgcattaaagctcccgcatacgcagggcgcgggaaggggtc-caccattttggtgtattgtacgcaaccttaccctgtttttt 50812003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 6358282 - 6358185
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||| |||| ||| | ||||||||| ||||||||||||| | |  ||||||  ||| ||||||||| |||| ||||||||||  |||||||| ||||    
T  6358282 aaaaagggcagccccgatcactaaagatcctgcatacgcagggtctgggaaggggtcccaccattttggtgttttgtacgcagctttaccctgatttt 6358185  T

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Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 18724610 - 18724647
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  18724610 gtgtattgtacacagccttaccctgttttttacacaag 18724647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 31442432 - 31442485
Alignment:
Q  67 cgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||||  ||| ||||||||| ||||||||||||||  |||||||||||||||    
T  31442432 cgggaaggggtcccaccattttggtgtattgtacgcatccttaccctgtttttt 31442485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 45812534 - 45812630
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| ||||||||||| ||||| |||||| ||||| ||| | || ||||||  ||| ||||| ||| |||||||||| |||| |||||||| ||||    
T  45812534 aaaaaaaggcaacccggtgcactagagctcccgcatatgcagggtttgggaaggggtcccacca-tttggtgtattgtatgcagccttaccctctttt 45812630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 14617189 - 14617094
Alignment:
Q  31 aacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||| |||||||||||| ||||| ||| | | |||||||   || ||||||||  ||||||||||||||  |||||| |||| ||||||||||    
T  14617189 aacccggtgcactaaagctcccgcatatgcagggtccgggaagggatcccaccatttg-gtgtattgtacgcaaccttaccttgttatttacacaag 14617094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 32632564 - 32632651
Alignment:
Q  31 aacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||| ||| |||| ||||||| ||||| ||| | || ||||||  ||| ||||||||  ||||||||||||||| ||||||||||||||    
T  32632564 aacctggtgcactcaagctcccgcatatgcagggtttgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgttttt 32632651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 44485129 - 44485212
Alignment:
Q  44 aaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaagt 128  Q
    |||||||| ||||||| | ||| |||||||  |||  |||||||  ||||||||||||||| |||||| ||| ||||||||||||    
T  44485129 aaagctcccgcatacgtaggatccgggaaggggtccaaccatttg-gtgtattgtacgcagccttaccatgtcttttacacaagt 44485212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 45402250 - 45402175
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcag 104  Q
    ||||||||||| |||||||||||| ||||||||| | |  ||||||  ||| ||||| ||| |||||||||||||||    
T  45402250 ggcaacccggtgcactaaagctcccgcatacgcagggtctgggaaggggtcccacca-tttggtgtattgtacgcag 45402175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 40272808 - 40272914
Alignment:
Q  20 taaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||||||  ||||||||||||||| ||||||||||||||    
T  40272808 taaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgttttt 40272906  T
Q  120 tacacaag 127  Q
    ||||||||    
T  40272907 tacacaag 40272914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 13628789 - 13628894
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    |||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||||| || ||||||||||||||| |||||||||||| |||    
T  13628789 aaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgtttctta 13628888  T
Q  122 cacaag 127  Q
    ||||||    
T  13628889 cacaag 13628894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 45786218 - 45786318
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttag-tgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    ||||||||||| |||||||||||| |||| |||| | | |||||||  ||| ||||||||| | |||||||||||||| |||||||||||||||||||||    
T  45786218 ggcaacccggtgcactaaagctccagcattcgcagggtccgggaaggggtcccaccatttttggtgtattgtacgcagccttaccctgttttttacacaa 45786317  T
Q  127 g 127  Q
    |    
T  45786318 g 45786318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 46421031 - 46421139
Alignment:
Q  21 aaaaaatggcaacccggttcact-aaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| ||||| ||||| |||| |||||||| ||||||||| | | |||||||  ||| ||||||| || ||||||||||||||| |||||||||||||    
T  46421031 aaaaaagggcaaaccggtgcacttaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgtttt 46421130  T
Q  119 ttacacaag 127  Q
    |||||||||    
T  46421131 ttacacaag 46421139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 49013469 - 49013577
Alignment:
Q  20 taaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||||| ||||||||||| |||||||||||| || || ||  | | |||||||  ||| ||||||| || ||||||||||||||| |||||||||||||    
T  49013469 taaaaaagggcaacccggtgcactaaagctcccgcgtatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgtttt 49013568  T
Q  119 ttacacaag 127  Q
    |||||||||    
T  49013569 ttacacaag 49013577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 13730599 - 13730706
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||| ||||||||||| |||||||||||| ||||| ||  | | |||||||  ||| ||||||| || ||||||||||| ||| ||||||||||||||    
T  13730599 aaaaaagggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacacagccttaccctgttttt 13730698  T
Q  120 tacacaag 127  Q
    ||||||||    
T  13730699 tacacaag 13730706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 34420659 - 34420746
Alignment:
Q  40 cactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||  |||||||| | | |||||||  ||| ||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  34420659 cactaaagctcccacatacgcaaggtccgggaaggggtcccaccattttggtgtatggtacgcagccttaccctgttttttacacaag 34420746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 54374341 - 54374448
Alignment:
Q  20 taaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||||||||| || |||  ||||||||||| ||||| ||| | | |||||||  ||| ||||||||| ||| ||||||||||| |||||||| |||||    
T  54374341 taaaaaatggcagcctggtgaactaaagctcccgcatatgcagggtccgggaaggggtcccaccattttggtggattgtacgcagccttaccctattttt 54374440  T
Q  120 tacacaag 127  Q
    ||||||||    
T  54374441 tacacaag 54374448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 54484850 - 54484753
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||| ||| ||||||||||||||| |||||| ||||||||    
T  54484850 aaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca-tttggtgtattgtacgcagccttaccttgtttttt 54484753  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 353353 - 353450
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttttacac 124  Q
    ||||||||||| |||||||||||| ||||| ||  | | |||||||  ||| ||||||| || ||||||||||||||| |||||||||||||||||||    
T  353353 ggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgttttttacac 353450  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 829452 - 829521
Alignment:
Q  34 ccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgca 103  Q
    ||||| |||||||||||||||||||||| | |||||||||  ||| ||||||||| ||||||||||||||    
T  829452 ccggtgcactaaagctcctgcatacgcagggttcgggaaggggtcccaccattttggtgtattgtacgca 829521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 8247706 - 8247791
Alignment:
Q  43 taaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||| ||||||||| | | ||||||| |||| ||||||| || ||||||||||||||  ||||||||||||||||||||||    
T  8247706 taaagctcccgcatacgcagggtccgggaaggagtcccaccattattggtgtattgtacgcaaccttaccctgttttttacacaag 8247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 14987109 - 14987012
Alignment:
Q  31 aacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||| |||||||||||| ||||| ||| | | ||||||   ||| ||||||| || ||||||||||||||| ||||||||||||||||||||||    
T  14987109 aacccggtgcactaaagctcccgcatatgcaaggtccgggaatgggtcccaccattattggtgtattgtacgcagccttaccctgttttttacacaag 14987012  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 25517169 - 25517249
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcag 104  Q
    |||| ||||||||||| |||||||||||| ||||||||| ||| |||||||  ||| ||||||||| |||||||||||||||    
T  25517169 aaaagggcaacccggtgcactaaagctccagcatacgcaggatccgggaaggggtcccaccatttt-gtgtattgtacgcag 25517249  T

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Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 29366719 - 29366824
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    |||| |||||||| || ||||||||||||  |||||||| | | |||||||  ||| ||||||| || ||||||||||||||| ||||||||||||||||    
T  29366719 aaaagggcaacccagtgcactaaagctcccacatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgtttttta 29366818  T
Q  122 cacaag 127  Q
     |||||    
T  29366819 tacaag 29366824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 53996563 - 53996668
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    ||||| |||| |||||| ||||||||||||  ||||||||   |  ||||||  ||| ||||||||| |||||||||| |||| ||||||||||||||||    
T  53996563 aaaaagggcagcccggtgcactaaagctcccacatacgcagtgtcagggaaggggtcccaccattttggtgtattgtaagcagccttaccctgtttttta 53996662  T
Q  122 cacaag 127  Q
    ||||||    
T  53996663 cacaag 53996668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 22609918 - 22609828
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||||||||| |||| ||||||| ||||||||| | | |||||||  ||| ||||||||  ||||||||||||||| ||||||||||||||    
T  22609918 ggcaacccggtgcactgaagctcccgcatacgcaaggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgttttt 22609828  T

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Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 7943150 - 7943045
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||| |||||||| || |||||||||||| ||||||||| | |  || |||   || |||||||| | ||||||||||||||||||||||||||||||    
T  7943150 aaaaaaaggcaacccagtgcactaaagctcccgcatacgcatggtctggaaagggatcccaccatttga-tgtattgtacgcagtcttaccctgtttttt 7943052  T
Q  121 acacaag 127  Q
    | |||||    
T  7943051 agacaag 7943045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 26869866 - 26869769
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||| ||||||||||| ||| |||||||| ||||||||| | | ||| |||  ||| ||||||||  ||||||||||||||| ||||||||||||||    
T  26869866 aaaaaagggcaacccggtgcaccaaagctcccgcatacgcatggtccggcaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgttttt 26869769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 31593000 - 31592911
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||||||||| ||||| |||||| ||||| ||| | | ||||||| |||| ||||||||  ||||||||||||||| |||||||||||||    
T  31593000 ggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggagtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 31592911  T

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Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 10795427 - 10795527
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttag-tgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    ||||||| ||| |||| ||||||| ||||||||| | | | |||||  ||| ||||||||| | |||||||||||||| |||||||||| ||||||||||    
T  10795427 ggcaacctggtgcactgaagctcccgcatacgcagggtccaggaaggggtcccaccatttttggtgtattgtacgcagccttaccctgtcttttacacaa 10795526  T
Q  127 g 127  Q
    |    
T  10795527 g 10795527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 12914034 - 12914137
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttac 122  Q
    |||| ||||||||||| || | ||||||| ||||| ||| | |  ||||||  ||||||||||||  ||||||||||||| | |||||||||||||||||    
T  12914034 aaaagggcaacccggtgcattgaagctcccgcatatgcagggtctgggaaggggtctcaccatttg-gtgtattgtacgccgccttaccctgttttttac 12914132  T
Q  123 acaag 127  Q
    |||||    
T  12914133 acaag 12914137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 55401278 - 55401231
Alignment:
Q  80 caccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||||||    
T  55401278 caccattttggtgtattatacgcagtcttaacctgttttttacacaag 55401231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 15797381 - 15797284
Alignment:
Q  20 taaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||||| ||||||||||| ||||| ||||||  |||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  15797381 taaaaaagggcaacccggtgcactagagctcccacatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 15797284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 39203667 - 39203578
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||||||||| |||||||||||| ||||| ||| | | |||||||  ||| ||||| ||| ||||||||||||||  |||||||||||||    
T  39203667 ggcaacccggtgcactaaagctcccgcatatgcaaggtccgggaaggggtcccacca-tttggtgtattgtacgcaaccttaccctgtttt 39203578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 9276356 - 9276319
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  9276356 gtgtattgtacgcagccttaccctgttttttacacaag 9276319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 52926216 - 52926304
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttac 110  Q
    |||||| ||||||||||| | |||||||||| ||||||||| | | |||||||  ||| ||||| ||| ||||||||||||||| |||||    
T  52926216 aaaaaagggcaacccggtgcgctaaagctcccgcatacgcagggtccgggaaggtgtcccacca-tttggtgtattgtacgcagccttac 52926304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 1217247 - 1217152
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| | ||||||  ||||||||||||||| |||||||||||||    
T  1217247 aaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccgccatttg-gtgtattgtacgcagccttaccctgtttt 1217152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 4495729 - 4495765
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    ||||||||||||||| |||||||||||||||||||||    
T  4495729 gtgtattgtacgcagccttaccctgttttttacacaa 4495765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 34771362 - 34771457
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||| |||| |||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  34771362 aaaaagggcagcccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 34771457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 26573219 - 26573184
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacaca 125  Q
    ||||||||||||||| ||||||||||||||||||||    
T  26573219 gtgtattgtacgcagccttaccctgttttttacaca 26573184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 22122921 - 22123010
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||||||||| ||||| |||||  ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  22122921 ggcaacccggtgcactagagctctcgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 22123010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 24851298 - 24851364
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattt 87  Q
    |||||| ||||||||||| |||||||||||| ||||| ||| ||| |||||||  ||| ||||||||    
T  24851298 aaaaaagggcaacccggtgcactaaagctcccgcatatgcaggatccgggaaggggtcccaccattt 24851364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 33235628 - 33235594
Alignment:
Q  86 tttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||||||||||||| |||||||||||||||||||    
T  33235628 tttagtgtattgtacacagtcttaccctgtttttt 33235594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 4495672 - 4495713
Alignment:
Q  20 taaaaaatggcaacccggttcactaaagctcctgcatacgca 61  Q
    ||||||| ||||||||||| |||||||||||| |||||||||    
T  4495672 taaaaaagggcaacccggtgcactaaagctcccgcatacgca 4495713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 31904922 - 31904955
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttaca 123  Q
    ||||||||||||||||| ||||||||||||||||    
T  31904922 gtgtattgtacgcagtcataccctgttttttaca 31904955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 52428542 - 52428579
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  52428542 gtgtattgtacgcagccttaccctgtattttacacaag 52428579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 54032624 - 54032661
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  54032624 gtgtattgtatgcagccttaccctgttttttacacaag 54032661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 16735598 - 16735503
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||| |||||||| || |||| ||||| | |||||||||   | |||||||  ||| ||||||||  ||||||||||||||| ||||||||||||||    
T  16735598 aaaagggcaacccagtgcactgaagctaccgcatacgcagtgtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgttttt 16735503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 39212081 - 39212045
Alignment:
Q  91 tgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  39212081 tgtattgtacgcagtcttaccttgttatttacacaag 39212045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 40390401 - 40390361
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgca 61  Q
    |||||| ||||||||||| |||||||||||| |||||||||    
T  40390401 aaaaaagggcaacccggtgcactaaagctcccgcatacgca 40390361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 47624259 - 47624219
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgca 61  Q
    |||||| ||||||||||| |||||||||||| |||||||||    
T  47624259 aaaaaagggcaacccggtgcactaaagctcccgcatacgca 47624219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 39460993 - 39461098
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    |||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||||||||||| || ||||||||||||||| ||||| ||||||||||    
T  39460993 aaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtctcaccattattggtgtattgtacgcagccttactctgtttttta 39461092  T
Q  122 cacaag 127  Q
    ||||||    
T  39461093 cacaag 39461098  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 33867083 - 33866983
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcacca-ttttagtgtattgtacgcagtcttaccctg-ttttttacaca 125  Q
    ||||||||||| |||||||||| ||||||||||| | ||||||||||||| |||||| ||||  ||||||||| |||||||||||||| |||||||||||    
T  33867083 ggcaacccggtgcactaaagcttctgcatacgcagggttcgggaagaagtgtcaccattttttatgtattgtatgcagtcttaccctgcttttttacaca 33866984  T
Q  126 a 126  Q
    |    
T  33866983 a 33866983  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 35261818 - 35261712
Alignment:
Q  20 taaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||||| ||||||||||| |||||||||||| ||||||||| | | | |||||  ||| ||||||||  ||||||||||||||  ||||||||||||||    
T  35261818 taaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccaggaaggggtcccaccatttg-gtgtattgtacgcaaccttaccctgttttt 35261720  T
Q  120 tacacaag 127  Q
    ||||||||    
T  35261719 tacacaag 35261712  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 28817624 - 28817728
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    ||||| ||||||||| | |||||||||||| ||||||||| | | |||||||  ||| |||||||   ||||||||||||||| ||||||||||||||||    
T  28817624 aaaaagggcaacccgatgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattgg-gtgtattgtacgcagccttaccctgtttttta 28817722  T
Q  122 cacaag 127  Q
    ||||||    
T  28817723 cacaag 28817728  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 44530278 - 44530182
Alignment:
Q  30 caacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||| |||||||||||| ||||||||| | | | |||||  ||| ||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  44530278 caacccggtgcactaaagctcccgcatacgcagggtccaggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgttttttacacaag 44530182  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 36720932 - 36720829
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttac 122  Q
    |||| ||||||| ||| |||||||||| | ||||||||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||||||    
T  36720932 aaaagggcaaccgggtgcactaaagcttccgcatacgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgttttttac 36720834  T
Q  123 acaag 127  Q
    |||||    
T  36720833 acaag 36720829  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 17823707 - 17823609
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||| |||||||||||||||||| ||| | |||||||||  ||  ||||| ||| ||||||| |||||||||||| |||| ||||||||||||    
T  17823707 ggcaacccggtgcactaaagctcctgcatatgcagggttcgggaaggggttccacca-tttggtgtattttacgcagtcttatcctggtttttacacaag 17823609  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 20870063 - 20869956
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||| ||||||||||| |||||||||||| ||||| ||  | | | |||||  ||| ||||||| || ||||||||||||||| ||||||||||||||    
T  20870063 aaaaaagggcaacccggtgcactaaagctcccgcatatgcggggtcctggaaggggtcccaccattattggtgtattgtacgcagccttaccctgttttt 20869964  T
Q  120 tacacaag 127  Q
    ||||||||    
T  20869963 tacacaag 20869956  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 12626026 - 12625930
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||| ||||||||||| |||||||||||| ||||||||| | | ||||| |  ||| ||||||||  |||||||||| ||||||||||||||||||||    
T  12626026 aaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggagggggtcccaccatttg-gtgtattgtatgcagtcttaccctgtttttt 12625930  T

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Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 6760962 - 6760855
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||| ||||||||||| |||||||||||| ||||| ||  | | || ||||  ||| ||||||| || |||||||||||| || ||||||||||||||    
T  6760962 aaaaaagggcaacccggtgcactaaagctcccgcatatgcggggtccgagaaggggtcccaccattattggtgtattgtacgaagccttaccctgttttt 6760863  T
Q  120 tacacaag 127  Q
    ||||||||    
T  6760862 tacacaag 6760855  T

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Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 7136524 - 7136631
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||| || |||||||| |||||||||||| ||||| ||  | | |||||||  ||| ||||||| || ||||||||||||||| ||||||||| ||||    
T  7136524 aaaaaagggtaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctggtttt 7136623  T
Q  120 tacacaag 127  Q
    ||||||||    
T  7136624 tacacaag 7136631  T

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Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 14018024 - 14018071
Alignment:
Q  80 caccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||    
T  14018024 caccaatttagtgtattgtacgcagtctcaccctgttttttacacaag 14018071  T

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Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 45071395 - 45071305
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||||||||| |||| ||||||| ||||||||| | | |||||||  ||| ||||||||  ||||||||||||||| ||||||||||||||    
T  45071395 ggcaacccggtgcactgaagctcccgcatacgcaaggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgttttt 45071305  T

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Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 5689761 - 5689664
Alignment:
Q  29 gcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||| ||||| ||||||||||||  |||||||| | |||||||||  ||  ||||||||  ||||||||||||||| ||||||||| ||||||||||||    
T  5689761 gcaaaccggtgcactaaagctcccacatacgcatggttcgggaaggggttccaccatttg-gtgtattgtacgcagccttaccctgctttttacacaag 5689664  T

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Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 16225150 - 16225056
Alignment:
Q  30 caacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttttaca 123  Q
    ||||||||| |||||||||||| ||||| ||  | | |||||||   || ||||||| || ||||||||||||||||||||||||||||||||||    
T  16225150 caacccggtgcactaaagctcccgcatatgcggggtccgggaagggatcccaccattattggtgtattgtacgcagtcttaccctgttttttaca 16225056  T

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Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 29877213 - 29877128
Alignment:
Q  40 cactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    |||||| ||||| ||||||||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||||||||||    
T  29877213 cactaacgctcccgcatacgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgttttttacacaa 29877128  T

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Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 5135288 - 5135391
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    ||||| |||| |||||| ||| |||||||||||||||||| | | |||||||  ||| ||||||||  ||||||||||| ||| |||||||| |||||||    
T  5135288 aaaaagggcagcccggtgcac-aaagctcctgcatacgcagggtccgggaaggggtcccaccatttg-gtgtattgtacacagccttaccctctttttta 5135385  T
Q  122 cacaag 127  Q
    ||||||    
T  5135386 cacaag 5135391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 25250661 - 25250556
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||| ||||||||||| ||||||| |||| ||||| ||  | |||||||||  ||| ||||||| || ||||||||||||||| | |||||| ||||||    
T  25250661 aaaaagggcaacccggtgcactaaatctcccgcatatgcggggttcgggaaggggtcccaccattattggtgtattgtacgcagccataccctatttttt 25250562  T
Q  121 acacaa 126  Q
    ||||||    
T  25250561 acacaa 25250556  T

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Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 44742574 - 44742619
Alignment:
Q  80 caccattttagtgtattgtacgcagtcttaccctgttttttacaca 125  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||    
T  44742574 caccattttggtgtattgtacgcagccttaccctgttttttacaca 44742619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 17250891 - 17250979
Alignment:
Q  40 cactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||| |||||||| | ||||||||   ||| ||||||| || ||||||||||||| | |||| |||||||||||||||||    
T  17250891 cactaaagctccttcatacgcagggttcgggaaagggtcccaccattattggtgtattgtacgctgccttaacctgttttttacacaag 17250979  T

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Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 13160832 - 13160742
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||||||||  |||| ||||||| ||||||||| | | |||||||  ||| ||||||||  ||||||||||||||| ||||||||||||||    
T  13160832 ggcaacccggcgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgttttt 13160742  T

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Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 20284075 - 20284166
Alignment:
Q  30 caacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||||||| ||||||| |||| ||||||||| | | |||||||  ||| ||||||| || ||||||||||||||| |||||||| ||||||    
T  20284075 caacccggtgcactaaaactcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctttttttt 20284166  T

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Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 21070703 - 21070794
Alignment:
Q  30 caacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||||||| ||||||| |||| ||||||||| | | |||||||  ||| ||||||| || ||||||||||||||| |||||||| ||||||    
T  21070703 caacccggtgcactaaaactcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctttttttt 21070794  T

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Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 8897761 - 8897866
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||| ||||||| ||| || ||||||||| ||||| ||| | | |||||||  ||| ||||||||  |||||||||||| || |||||||| ||||||    
T  8897761 aaaaaagggcaaccgggtgcagtaaagctcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgtagccttaccctatttttt 8897859  T
Q  121 acacaag 127  Q
    |||||||    
T  8897860 acacaag 8897866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 29521690 - 29521787
Alignment:
Q  29 gcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||||| |||||||||||| ||||||||| | |  |||| |   || ||||||||  ||||||||||||||| |||||||||||||||| |||||    
T  29521690 gcaacccggtgcactaaagctcccgcatacgcagggtctgggatgggttcccaccatttg-gtgtattgtacgcagccttaccctgttttttaaacaag 29521787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 12670247 - 12670343
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| || |||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  12670247 aaaaaagggtaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 12670343  T

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Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 18164758 - 18164854
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||||||||||||||| |||||||||||| ||||||||| | | ||||||   ||| || |  ||| ||||||||||||||  ||||||||||||||    
T  18164758 aaaaatggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaatggtcacatc-ctttggtgtattgtacgcaaccttaccctgttttt 18164854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 120
Target Start/End: Complemental strand, 2626592 - 2626562
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||||||||||||||||||||||||||||    
T  2626592 gtgtattgtacgcagtcttaccctgtttttt 2626562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 26954271 - 26954173
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||| |||||||| || |||||||||||| ||||| ||  | |  ||||||  ||| ||||||| || ||||||||||||||| |||||||||||||||    
T  26954271 aaaagggcaacccagtgcactaaagctcccgcatatgcgaggtctgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgtttttt 26954173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 27468089 - 27468143
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaa 75  Q
    |||||| ||||||||||| |||||||||||| ||||||||| | | |||||||||    
T  27468089 aaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaagaa 27468143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 8484003 - 8484040
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  8484003 gtgtattgtacgcagccttgccctgttttttacacaag 8484040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 30454094 - 30454190
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||| ||| |||||| |||||||| |||||| ||||||    
T  30454094 aaaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccacca-tttggtgtatcgtacgcagccttaccttgtttt 30454190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 36486570 - 36486627
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccat 85  Q
    ||||||||||  |||||||||||||||||||||| | | |||||||| ||| ||||||    
T  36486570 ggcaacccggggcactaaagctcctgcatacgcaaggtccgggaagaggtcccaccat 36486627  T

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Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 950591 - 950646
Alignment:
Q  21 aaaaaatgg-caacccggttcactaaagctcctgcatacgcacgattcgggaagaag 76  Q
    ||||||||| ||||||||| |||||||||||||||||| ||| || |||||||||||    
T  950591 aaaaaatggacaacccggtgcactaaagctcctgcatatgca-gagtcgggaagaag 950646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 24449028 - 24448924
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||| ||||||||||| |||||||||||||||||||||| | | |||||||  ||| ||||| ||| ||||||||||||||| |||||||| ||||||    
T  24449028 aaaaaagggcaacccggtgcactaaagctcctgcatacgcagggtccgggaaggggtcccacca-tttggtgtattgtacgcagccttaccctatttttt 24448930  T
Q  121 acacaa 126  Q
    ||||||    
T  24448929 acacaa 24448924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 38879719 - 38879614
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    |||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||||| || ||||||||||||||| ||||||||||||||||    
T  38879719 aaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgtttttta 38879620  T
Q  122 cacaag 127  Q
     |||||    
T  38879619 tacaag 38879614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 16880654 - 16880749
Alignment:
Q  31 aacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  16880654 aacccggtgcactaaagctcccgcatacgcatggtccgggaagtggtcacaccatttg-gtgtattgtacgcagccttaccctgttttttacacaag 16880749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 27328870 - 27328785
Alignment:
Q  43 taaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||| ||||||||| | |||||||||  ||| ||||||| || ||||||||||||||| ||||||||||||||||||||||    
T  27328870 taaagctcccgcatacgcagggttcgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgttttttacacaag 27328785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 4619103 - 4619208
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    |||| ||||||||||| |||||||||||  ||||| ||  | | |||||||  ||| ||||||| || ||||||||||||||| ||||||||||||||||    
T  4619103 aaaagggcaacccggtgcactaaagctctcgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgtttttta 4619202  T
Q  122 cacaag 127  Q
    ||||||    
T  4619203 cacaag 4619208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 13801771 - 13801871
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    ||||||||||| |||||||||||  ||||| ||  | | |||||||  ||| ||||||| || ||||||||||||||| |||||||||||||||||||||    
T  13801771 ggcaacccggtgcactaaagctctcgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgttttttacacaa 13801870  T
Q  127 g 127  Q
    |    
T  13801871 g 13801871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 20135737 - 20135637
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    ||||||||||| |||| ||||||||||||| ||  | | |||||||  ||| ||||||| || ||||||||||||||| |||||| ||||||||||||||    
T  20135737 ggcaacccggtgcactgaagctcctgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccttgttttttacacaa 20135638  T
Q  127 g 127  Q
    |    
T  20135637 g 20135637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 7097776 - 7097854
Alignment:
Q  40 cactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||||||||| ||||||||| | |||||||||  ||||||||| ||| ||||||||||||||  ||||||||||||||    
T  7097776 cactaaagctcccgcatacgcagggttcgggaaggggtctcacca-tttggtgtattgtacgcaaccttaccctgttttt 7097854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 43334341 - 43334243
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttag-tgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||| ||||||||||| |||||||||||| |||| |||| | | |||||||  ||| ||||||||| | |||||||||||||| |||||||||||||||    
T  43334341 aaaaagggcaacccggtgcactaaagctcccgcat-cgcagggtccgggaaggggtcccaccatttttggtgtattgtacgcagccttaccctgtttttt 43334243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 28516432 - 28516536
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttac 122  Q
    |||| ||||||| ||| ||||||||||||||||| |||| | |  |||||   ||| |||||||||  |||||||||||||| | || ||||||||||||    
T  28516432 aaaagggcaacctggtccactaaagctcctgcatgcgcagggtctgggaatgggtcccaccattttgatgtattgtacgcagccctagcctgttttttac 28516531  T
Q  123 acaag 127  Q
    |||||    
T  28516532 acaag 28516536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 32703558 - 32703464
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  32703558 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 32703464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 43574732 - 43574639
Alignment:
Q  33 cccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||| | |||||||||| ||||||||| | | |||||||  ||| ||||||||  || |||||||||||| ||||||||||||| ||||||||    
T  43574732 cccggtgctctaaagctcccgcatacgcagggtccgggaaggggtcccaccatttg-gtatattgtacgcagccttaccctgttttctacacaag 43574639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 12477136 - 12477205
Alignment:
Q  40 cactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtctta 109  Q
    ||||||||||| ||||||||||  || |||||||  ||| ||||||||| ||||||||||||||| ||||    
T  12477136 cactaaagctcttgcatacgcagaatccgggaaggggtcccaccattttggtgtattgtacgcagcctta 12477205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 8169982 - 8170077
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||| ||||||||||| |||| || |||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  8169982 aaaaagggcaacccggtgcactgaaactcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 8170077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 29334532 - 29334428
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttac 122  Q
    |||| |||| |||||| || ||||| |||  |||||||| | | ||||||   ||| ||||||| | ||||||||||||||| |||||| ||||||||||    
T  29334532 aaaagggcagcccggtgcattaaagatcccacatacgcagggtccgggaatgggtcccaccattctggtgtattgtacgcagccttaccttgttttttac 29334433  T
Q  123 acaag 127  Q
    |||||    
T  29334432 acaag 29334428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 12575664 - 12575739
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgca 103  Q
    |||| |||||| ||| |||||||||||||||||| | | | |||||  ||| ||||||||| ||||||||||||||    
T  12575664 ggcagcccggtgcaccaaagctcctgcatacgcagggtccaggaaggggtcccaccattttggtgtattgtacgca 12575739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 208936 - 209022
Alignment:
Q  33 cccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||| ||||||||||| ||||||| || | | | |||||  ||| ||||||||| |||||||| | |||| ||||||||||||||    
T  208936 cccggtgcactaaagctcttgcatacccagggtccaggaaggggtcccaccattttggtgtattgaatgcagccttaccctgttttt 209022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 22187360 - 22187318
Alignment:
Q  85 ttttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||| |||||||||||||||||||| | |||||||||||||||    
T  22187360 ttttggtgtattgtacgcagtcttatcatgttttttacacaag 22187318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 22600569 - 22600488
Alignment:
Q  44 aaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    |||||||| ||||||||| ||| |||||||   || ||||||||  ||||||||||| ||| |||||||||| ||||||||||    
T  22600569 aaagctcccgcatacgcaggatccgggaagggatcccaccatttg-gtgtattgtacacagccttaccctgtgttttacacaa 22600488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 42924894 - 42924936
Alignment:
Q  85 ttttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||| ||||||||||||||  ||||||||||||||||||||||    
T  42924894 ttttggtgtattgtacgcaaccttaccctgttttttacacaag 42924936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 16957450 - 16957374
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtac 100  Q
    |||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||| ||| |||||||||||    
T  16957450 aaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca-tttggtgtattgtac 16957374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 35710449 - 35710353
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||| ||| |||||||| |||||| |||||||| ||||    
T  35710449 aaaaaagggcaacccggtgcactagagctcccgcatatgcatgttccgggaaggggtcccacca-tttggtgtattgaacgcagccttaccctatttt 35710353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 39801652 - 39801616
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacg 59  Q
    |||||||||||||||| |||||||||||| |||||||    
T  39801652 aaaatggcaacccggtgcactaaagctcccgcatacg 39801616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 41426018 - 41425982
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    |||||||||| |||| |||||||||||||||||||||    
T  41426018 gtgtattgtatgcagccttaccctgttttttacacaa 41425982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 10543831 - 10543731
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttag-tgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||||||| | |||||||||||||| |||||||||||||||||||||    
T  10543831 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatttttggtgtattgtacgcagccttaccctgttttttacacaa 10543732  T
Q  127 g 127  Q
    |    
T  10543731 g 10543731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 8455315 - 8455418
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttac 122  Q
    |||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||| ||||||    
T  8455315 aaaagggcaacccggtgcactaaagctccggcatacgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtgttttac 8455413  T
Q  123 acaag 127  Q
    |||||    
T  8455414 acaag 8455418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 10546301 - 10546203
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||| ||| ||||||||||||||| |||||||||||||||    
T  10546301 aaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca-tttggtgtattgtacgcagccttaccctgtttttt 10546203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 25632640 - 25632544
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacaca 125  Q
    ||||||||||| |||||||||||| ||||||| | | ||||||||| | || ||||||||  ||||||||||||||| |||| |||||||||||||||    
T  25632640 ggcaacccggtgcactaaagctcccgcatacgtaaggttcgggaaggaatcccaccatttg-gtgtattgtacgcagccttatcctgttttttacaca 25632544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 14530451 - 14530351
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||||| || |||||||||||| || |||||||||||||||| ||||    
T  14530451 ggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccattattggtgtattgtacgtagccttaccctgttttttatacaa 14530352  T
Q  127 g 127  Q
    |    
T  14530351 g 14530351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 9671315 - 9671221
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||| ||| ||||||||||||||| |||||||||||||    
T  9671315 aaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca-tttggtgtattgtacgcagccttaccctgtttt 9671221  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 17623703 - 17623597
Alignment:
Q  20 taaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||||| |||||||| || |||||||||| |  |||||||| |||||||||||  ||  ||||||||  ||||||||||||||| ||||||||| ||||    
T  17623703 taaaaaagggcaacccagtgcactaaagcttccacatacgcaggattcgggaaggggttccaccatttg-gtgtattgtacgcagccttaccctgatttt 17623605  T
Q  120 tacacaag 127  Q
    ||||||||    
T  17623604 tacacaag 17623597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 36871629 - 36871534
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||| ||| ||||||||||||||| |||||||||||||    
T  36871629 aaaaaagggcaacccggtgcactaaagctcccgcatacgca-ggtccgggaaggggtcccacca-tttggtgtattgtacgcagccttaccctgtttt 36871534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 127
Target Start/End: Complemental strand, 19615112 - 19615025
Alignment:
Q  40 cactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||||||||||||||||| | |||||||||  ||| ||| ||| || || ||||||||||||||||||||||||||||| |||||    
T  19615112 cactaaagctcctgcatacgcagggttcgggaaggggtc-cactattattggtatattgtacgcagtcttaccctgttttttatacaag 19615025  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 25249735 - 25249830
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttt 117  Q
    |||||| ||||||||||| |||||||||||  ||||||||| | |||||||||   || ||||| ||| ||||||||||||||| ||||||||||||    
T  25249735 aaaaaagggcaacccggtgcactaaagctcacgcatacgcagggttcgggaagggatcccacca-tttggtgtattgtacgcagccttaccctgttt 25249830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 17668141 - 17668035
Alignment:
Q  20 taaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||||| ||||||||||| ||||||||||||   ||||||| | |||| ||||  ||  ||||||||  ||||||||||||||| ||||||||| ||||    
T  17668141 taaaaaagggcaacccggtgcactaaagctcccatatacgcagggttcgagaaggggttccaccatttg-gtgtattgtacgcagccttaccctgatttt 17668043  T
Q  120 tacacaag 127  Q
    ||||||||    
T  17668042 tacacaag 17668035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 24200622 - 24200727
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcacca-ttttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    |||| ||||||||||| |||||||||||   ||||| || | | |||||||   || ||||| |||| ||||||||||||||| ||||||||||||||||    
T  24200622 aaaagggcaacccggtgcactaaagctctcacatactcagggtccgggaagggttcccaccatttttggtgtattgtacgcagccttaccctgtttttta 24200721  T
Q  122 cacaag 127  Q
    ||||||    
T  24200722 cacaag 24200727  T

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Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 32781353 - 32781390
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32781353 gtgtattgtacgcagtcttaccctgttttttacacaag 32781390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 14444866 - 14444769
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||| ||||||| ||| |||||||||||| ||||||||| | | |||||||  ||| ||||| ||| |||||| |||| ||| ||||||||||||||    
T  14444866 aaaaaagggcaacctggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca-tttggtgtatcgtacacagccttaccctgttttt 14444769  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 26684630 - 26684715
Alignment:
Q  34 ccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||| || ||||||||| ||||||||| | |||||||||| ||| |||||||| ||| |||||||||||| |||||| | ||||||    
T  26684630 ccggtgcattaaagctcccgcatacgcagggttcgggaagaggtcccaccattt-agtatattgtacgcagccttaccatatttttt 26684715  T

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Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 25641639 - 25641543
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| | ||| |||||||||||||||||  ||||||||| |||||||||||  ||| || || ||| ||||||||||||||   ||||||||||||    
T  25641639 aaaaaaggacaatccggttcactaaagctctcgcatacgcaggattcgggaaggggtccca-caatttggtgtattgtacgcaactttaccctgtttt 25641543  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 25079721 - 25079812
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||||||||| ||||||||||| |||||||||| | | |||||||  ||| ||||| ||  ||||||||||||||  |||||| ||||||||    
T  25079721 ggcaacccggtgcactaaagctcttgcatacgcagggtccgggaaggggtcccacca-ttcggtgtattgtacgcatccttaccttgtttttt 25079812  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 7214618 - 7214567
Alignment:
Q  77 tctcaccatttta-gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||  ||||||||||||||| |||||||||| |||||||||||    
T  7214618 tctcaccattttttgtgtattgtacgcagccttaccctgtattttacacaag 7214567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 21377093 - 21377175
Alignment:
Q  44 aaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||  |||||||| | |||||||||  ||| ||||||||  ||| ||||||| ||| ||||||||||||||||||||||    
T  21377093 aaagctcccacatacgcagggttcgggaaggggtcccaccatttg-gtgcattgtacccagccttaccctgttttttacacaag 21377175  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 21779260 - 21779354
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||| ||| ||||||||||||||  |||||||||||||    
T  21779260 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccacca-tttggtgtattgtacgcaaccttaccctgtttt 21779354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 17471675 - 17471589
Alignment:
Q  34 ccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||| ||||||| |||| ||||| ||| | |  ||||||  |||||| |||||| || ||||||||||||||||| ||||||||||    
T  17471675 ccggtgcactaaaactcccgcataggcagggtcagggaaggggtctcatcattttggtatattgtacgcagtcttatcctgtttttt 17471589  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 23145763 - 23145800
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  23145763 gtgtattgtacgcagccttacactgttttttacacaag 23145800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 23557553 - 23557590
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  23557553 gtgtattgtacgcagccttacactgttttttacacaag 23557590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 5841166 - 5841062
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttag-tgtattgtacgcagtcttaccctgtttttta 121  Q
    |||| |||||| |||| |||||||||||| ||||| ||  | | |||||||  ||| ||||||| | | |||||||||||||  |||||||| |||||||    
T  5841166 aaaagggcaactcggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattgatgtattgtacgcatccttaccctatttttta 5841067  T
Q  122 cacaa 126  Q
    |||||    
T  5841066 cacaa 5841062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 12315697 - 12315748
Alignment:
Q  69 ggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    ||||| |||||||| ||||  ||||||||||| ||||||||||||||||||||    
T  12315697 ggaaggagtctcactatttg-gtgtattgtacacagtcttaccctgtttttta 12315748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 24890530 - 24890451
Alignment:
Q  40 cactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||||||||||||||||||| | | |||||||  ||| |||||  || |||||||||| |||| |||||| ||||||||    
T  24890530 cactaaagctcctgcatacgcagggtccgggaaggggtcccacca-attggtgtattgtatgcagccttaccttgtttttt 24890451  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 11617592 - 11617690
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||| |||||||| ||||||||||||| | | | |||||  ||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  11617592 ggcaacccggtgcactaaaggtcctgcatacgcagggtccaggaaggggtcccaccatttg-gtgtattgtacgcagtcttaccctgttttttacacaag 11617690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 7879776 - 7879671
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||| ||||||||||| |||| ||||||| ||||||||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||| ||||||||    
T  7879776 aaaaaagggcaacccggtgcactgaagctcccgcatacgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccttgtttttt 7879678  T
Q  121 acacaag 127  Q
    |||||||    
T  7879677 acacaag 7879671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 21566562 - 21566468
Alignment:
Q  33 cccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||| |||||||||||| ||||| ||| | |||||||||  |||  |||||||| ||||||||||||||||||| | ||||||||||||||||    
T  21566562 cccggtgcactaaagctcccgcatatgcagggttcgggaaggggtcctaccattttggtgtattgtacgcagtcttcctctgttttttacacaag 21566468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 35334823 - 35334915
Alignment:
Q  31 aacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacac 124  Q
    |||||||| |||||||||||||||||||||| | | |||||||  ||| |||||||   ||||||||||| |||||||||||||||||||||||    
T  35334823 aacccggtgcactaaagctcctgcatacgcagggtccgggaaggggtcccaccattcg-gtgtattgtacacagtcttaccctgttttttacac 35334915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 42805663 - 42805557
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||| ||||||||||| |||||||||||| ||||| ||  | | |||||||  ||| ||||||| || ||||||||||| ||| |||||||||||||||    
T  42805663 aaaaagggcaacccggtgcactaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacacagccttaccctgtttttt 42805564  T
Q  121 acacaag 127  Q
    |||||||    
T  42805563 acacaag 42805557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 2541026 - 2541121
Alignment:
Q  31 aacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||| |||||||||||| ||||||||| |   |||||||  ||| ||||||||  |||||| |||||||| ||||||||||||||||||||||    
T  2541026 aacccggtgcactaaagctcccgcatacgcagggaccgggaaggggtcccaccatttg-gtgtatagtacgcagccttaccctgttttttacacaag 2541121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 47716592 - 47716492
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    ||||||||||| ||| |||||||| ||||| ||  | | |||||||  ||| ||||||| || ||||||||||||||| |||||||||||||||||||||    
T  47716592 ggcaacccggtgcaccaaagctcccgcatatgcggggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctgttttttacacaa 47716493  T
Q  127 g 127  Q
    |    
T  47716492 g 47716492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 14099030 - 14099107
Alignment:
Q  48 ctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    |||||||||||| | | |||||||||  ||| ||||||||  |||||||||||||||||||| ||||||||||||||||    
T  14099030 ctcctgcatacgtagggttcgggaaggggtcccaccatttg-gtgtattgtacgcagtcttaacctgttttttacacaa 14099107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 14409047 - 14409124
Alignment:
Q  48 ctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaa 126  Q
    |||||||||||| | | |||||||||  ||| ||||||||  |||||||||||||||||||| ||||||||||||||||    
T  14409047 ctcctgcatacgtagggttcgggaaggggtcccaccatttg-gtgtattgtacgcagtcttaacctgttttttacacaa 14409124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 17048812 - 17048914
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    ||||||||||| |  ||||||||||||||||| |||| ||| | | |||||||  ||  ||||||||| |||||||||||| |  |||||||||||||||    
T  17048812 aaaaaatggcagcttggttcactaaagctcctacataagcaagttccgggaaggggttccaccattttggtgtattgtacgtaaccttaccctgtttttt 17048911  T
Q  121 aca 123  Q
    |||    
T  17048912 aca 17048914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 22699030 - 22699072
Alignment:
Q  85 ttttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  22699030 ttttggtgtattgtacgcagtcttaccctgttttttacacaag 22699072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 23419739 - 23419776
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23419739 gtgtattgtacgcagtcttaccctgttttttacacaag 23419776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 42391097 - 42391193
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  42391097 aaaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 42391193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 16341371 - 16341311
Alignment:
Q  67 cgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||||||| | | ||||||||| |||||||||||| || ||||||||||||||||||||||    
T  16341371 cgggaagagggcccaccattttggtgtattgtacgtagccttaccctgttttttacacaag 16341311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 43557613 - 43557505
Alignment:
Q  21 aaaaaatggcaacccggttcactaaa-gctcctgcatacgcacgattcgggaagaagtctcaccatt-ttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| ||||||||||| ||||||| ||||| |||||||||   | ||||| |  ||| ||||||| || ||||||||||||||| ||||| |||||||    
T  43557613 aaaaaagggcaacccggtgcactaaaagctcccgcatacgcagagtccgggagggggtcccaccattattggtgtattgtacgcagccttactctgtttt 43557514  T
Q  119 ttacacaag 127  Q
    |||||||||    
T  43557513 ttacacaag 43557505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 21172008 - 21172102
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  21172008 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 21172102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 14732831 - 14732920
Alignment:
Q  34 ccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcacca-ttttagtgtattgtacgcagtcttaccctgttttttaca 123  Q
    ||||| |||||||||||| |||||  || | ||||||||| ||| |||||| |||| |||||||| |||||| ||||||||||||||||||    
T  14732831 ccggtgcactaaagctcccgcataaacagggttcgggaaggagtttcaccatttttggtgtattg-acgcagccttaccctgttttttaca 14732920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 19426887 - 19426991
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||| ||||||||||| |||| ||||||  ||||| ||| | | || ||||  ||| ||||||||  |||||||||||||||||||||||| ||||||    
T  19426887 aaaaaagggcaacccggtgcactgaagctctcgcatatgcagggtccgagaagg-gtcccaccatttg-gtgtattgtacgcagtcttaccctatttttt 19426984  T
Q  121 acacaag 127  Q
    |||||||    
T  19426985 acacaag 19426991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 32758397 - 32758301
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||| ||| ||||||||||| ||| |||||||||||||    
T  32758397 aaaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccacca-tttggtgtattgtacacagccttaccctgtttt 32758301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 42798806 - 42798702
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    ||||| ||||||||| | ||||| |||||| ||||| ||| | | ||||||   ||| ||||||||  ||||||||||||||| |||||| |||||||||    
T  42798806 aaaaagggcaacccgatgcactatagctcccgcatatgcagggtccgggaaagggtcccaccatttg-gtgtattgtacgcagccttaccttgtttttta 42798708  T
Q  122 cacaag 127  Q
    ||||||    
T  42798707 cacaag 42798702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 46354264 - 46354227
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  46354264 gtgtattgtacgcagccttaccctgttttttacacaag 46354227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 25434144 - 25434052
Alignment:
Q  35 cggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    |||| |||||||||||| ||||||||| | | |  |||||||||  |||||||| |||| ||||| ||| ||||||| |||||||| ||||||    
T  25434144 cggtgcactaaagctcccgcatacgcagggtccaagaagaagtcataccattttggtgtgttgtatgcactcttaccatgttttttgcacaag 25434052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 38604642 - 38604567
Alignment:
Q  43 taaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    ||||||||| ||||||||| | | ||| |||  ||||||||||||  ||||||||||||||| ||||||||||||||    
T  38604642 taaagctcccgcatacgcagggtccggaaaggggtctcaccatttg-gtgtattgtacgcagccttaccctgttttt 38604567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 7645032 - 7644989
Alignment:
Q  84 attttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||| |||||||||||||  |||||||||||||||||||||||    
T  7645032 attttggtgtattgtacgctatcttaccctgttttttacacaag 7644989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 18747618 - 18747520
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctg-ttttttacacaa 126  Q
    |||| |||||| |||||||||||| ||||||||| | ||| |||||  ||| |||||  || ||||||| ||||||| ||||||||| ||||||||||||    
T  18747618 ggcagcccggtgcactaaagctcccgcatacgcagggttcaggaaggggtcccacca-attggtgtattatacgcagccttaccctgcttttttacacaa 18747520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 31591108 - 31591202
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||| |||| |||||||||||||| ||||| |||||||    
T  31591108 aaaagggcaacccggtgcactagagctcccgcatatgcaaggtccgggaaggggtcccacca-tttattgtattgtacgcagccttactctgtttt 31591202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 39093437 - 39093532
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttt 117  Q
    ||||| |||| |||||| |||||||||| ||||||| ||| | | |||||||   || ||| ||| | ||||||||||| ||||||||||||||||    
T  39093437 aaaaagggcagcccggtgcactaaagcttctgcatatgcaagttccgggaagggttcccactattatggtgtattgtacacagtcttaccctgttt 39093532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 1408595 - 1408490
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||| ||||| |||||  ||||||| | ||||||||||| | | |||||||  ||| ||||||||   |||||||||| ||| |||||| ||||||||    
T  1408595 aaaaaaaggcaatccggtgaactaaagattctgcatacgcagggtccgggaaggggtcccaccatttgc-tgtattgtacacagccttaccttgtttttt 1408497  T
Q  121 acacaag 127  Q
    |||||||    
T  1408496 acacaag 1408490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 13792148 - 13792250
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    ||||| |||| | |||| ||| |||||||| ||||||||| | |||| ||||  ||| | ||||||  |||||||||| |||||||||||  ||||||||    
T  13792148 aaaaagggcagctcggtgcacaaaagctccagcatacgcagggttcgagaaggggtcccgccatttgggtgtattgtatgcagtcttaccaagtttttta 13792247  T
Q  122 cac 124  Q
    |||    
T  13792248 cac 13792250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 19266520 - 19266482
Alignment:
Q  90 gtgtattgtacgcagtcttaccctgttttttacacaagt 128  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  19266520 gtgtattgtacgcagccttaccctgttttttacgcaagt 19266482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 27889310 - 27889395
Alignment:
Q  18 agtaaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcag 104  Q
    ||||||||| |||||||||||  || |||||||| ||||||||| | | |||||||  ||| ||||| ||| |||||||||||||||    
T  27889310 agtaaaaaagggcaacccggtgtaccaaagctcccgcatacgcagggtccgggaaggggtcccacca-tttggtgtattgtacgcag 27889395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 34626205 - 34626302
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttt 119  Q
    |||||| ||||||||| |  ||||||||||| ||||||||| | | |||||||   || ||||||||  |||||||| |||||| ||||||||||||||    
T  34626205 aaaaaagggcaacccgatgaactaaagctcccgcatacgcagggtccgggaagggatcccaccatttg-gtgtattgaacgcagccttaccctgttttt 34626302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 35203506 - 35203472
Alignment:
Q  93 tattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||||||||||||| |||||||||||||||||    
T  35203506 tattgtacgcagtcttatcctgttttttacacaag 35203472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 48735126 - 48735215
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||| ||||||    
T  48735126 ggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccgtgtttt 48735215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 27629771 - 27629667
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttta 121  Q
    ||||| ||||||||||| |||| ||||| | ||||| ||| |   |||||||  ||| ||||||||  ||||||| ||||||  ||||||||||||||||    
T  27629771 aaaaagggcaacccggtgcactgaagctaccgcatatgcagggcccgggaaggggtcccaccatttg-gtgtattttacgcaaccttaccctgtttttta 27629673  T
Q  122 cacaag 127  Q
    ||||||    
T  27629672 cacaag 27629667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 36602585 - 36602545
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgca 61  Q
    |||||| ||||||||||| |||||||||||| |||||||||    
T  36602585 aaaaaagggcaacccggtgcactaaagctcccgcatacgca 36602545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 24769 - 24874
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||| ||||||| | | |||||||||||| ||||||||| | |||||||||  ||| ||||||||  |||| |||||||||| |||||||||||||||    
T  24769 aaaaaagggcaaccggctgcactaaagctcccgcatacgcagggttcgggaaggggtcccaccatttg-gtgtgttgtacgcagccttaccctgtttttt 24867  T
Q  121 acacaag 127  Q
    |||||||    
T  24868 acacaag 24874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 46969 - 46864
Alignment:
Q  21 aaaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttttt 120  Q
    |||||| ||||||||||| |||||||||||| ||||||||| | | |||||||  ||| ||||| ||| ||||||||||||||  |||||||| ||||||    
T  46969 aaaaaagggcaacccggtgcactaaagctcccgcatacgcagggtccgggaaggggtcccacca-tttggtgtattgtacgcaaccttaccctatttttt 46871  T
Q  121 acacaag 127  Q
    |||||||    
T  46870 acacaag 46864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 59110 - 59010
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattc-gggaagaagtctcaccattttag-tgtattgtacgcagtcttaccctgttttttacaca 125  Q
    ||||||||| | |||||||||||| ||||||||| || || ||||||  ||| ||||||||| | ||||||||||||||||||||||||||||||| |||    
T  59110 ggcaacccgatgcactaaagctcccgcatacgca-gagtctgggaaggggtcccaccatttttggtgtattgtacgcagtcttaccctgttttttataca 59012  T
Q  126 ag 127  Q
    ||    
T  59011 ag 59010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 10940 - 10843
Alignment:
Q  29 gcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgttttttacacaag 127  Q
    ||||||| || |||||||||||| ||||||||| | | |||||||  ||| ||||||||  |||||||| |||||| | ||||||||||||||||||||    
T  10940 gcaacccagtgcactaaagctcccgcatacgcagggtccgggaaggggtcccaccatttg-gtgtattggacgcagccctaccctgttttttacacaag 10843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 48633 - 48727
Alignment:
Q  23 aaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    |||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||||||  ||||||||||||||| |||||||||||||    
T  48633 aaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccaccatttg-gtgtattgtacgcagccttaccctgtttt 48727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 30714 - 30619
Alignment:
Q  22 aaaaatggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||| ||||||||||| ||||| |||||| ||||| ||| | | |||||||  ||| ||||| ||| ||||||||||||||| | |||||||||||    
T  30714 aaaaagggcaacccggtgcactagagctcccgcatatgcagggtccgggaaggggtcccacca-tttggtgtattgtacgcagccctaccctgtttt 30619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 10054 - 10143
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||||||||| ||||  |||||||||||| ||| | | |||||||  ||| ||| ||||  ||||||||||||||||||||| |||||||    
T  10054 ggcaacccggtgcactggagctcctgcatatgcagggtccgggaaggggtcccactatttg-gtgtattgtacgcagtcttactctgtttt 10143  T

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Target: scaffold0187; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 20382 - 20471
Alignment:
Q  28 ggcaacccggttcactaaagctcctgcatacgcacgattcgggaagaagtctcaccattttagtgtattgtacgcagtcttaccctgtttt 118  Q
    ||||||||||| ||||  |||||||||||| ||| | | |||||||  ||| ||| ||||  ||||||||||||||||||||| |||||||    
T  20382 ggcaacccggtgcactggagctcctgcatatgcagggtccgggaaggggtcccactatttg-gtgtattgtacgcagtcttactctgtttt 20471  T

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