View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2540_high_6 (Length: 242)
Name: NF2540_high_6
Description: NF2540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2540_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 38028955 - 38029049
Alignment:
| Q |
1 |
ccaaatcaaacgaccacaatgcaaacaggcatgaactcaataatcgccgcaacattctcaccaataatcaaacacaaaacgcaaaaaactgcaca |
95 |
Q |
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| T |
38028955 |
ccaaatcaaacgaccacaatgcaaacaggcatgaactcaacaatcgccgcaacagtctcaccaataatcaaacacaaaacgcaaaaaactgcaca |
38029049 |
T |
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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 38029127 - 38029181
Alignment:
| Q |
172 |
ccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttg |
226 |
Q |
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| T |
38029127 |
ccagagttttcaagagccaagtgattatagtggttgattcgtttagacaaagttg |
38029181 |
T |
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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 31574623 - 31574713
Alignment:
| Q |
9 |
aacgaccacaatgcaaacaggcatgaactcaataatcgccgcaacattctcaccaataatcaaacacaaaacgcaaaaaactgcacagaac |
99 |
Q |
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| T |
31574623 |
aacgaccacaatgcaaacaggcatgaactcaacactcgccccaacaatctccccaataatcaaacactaaacacaaaaaactgcacagaac |
31574713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 31574789 - 31574844
Alignment:
| Q |
172 |
ccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgt |
227 |
Q |
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| T |
31574789 |
ccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgt |
31574844 |
T |
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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 6509418 - 6509512
Alignment:
| Q |
9 |
aacgaccacaatgcaaacaggcatgaactcaataatcgccgcaacattctcaccaataatcaaacac----aaaacgcaaaaaactgcacagaac |
99 |
Q |
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| T |
6509418 |
aacgaccacaatgcaaacaggcatgaactcaacagtcgctccaacaatctcaccaataatcaaacactaaataaacacaaaaaactgcacagaac |
6509512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 6509593 - 6509646
Alignment:
| Q |
174 |
agagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgt |
227 |
Q |
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| T |
6509593 |
agagttttcaagagccaagtgattatagtggttgattcgtttagacaaagttgt |
6509646 |
T |
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