View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2541_high_12 (Length: 248)
Name: NF2541_high_12
Description: NF2541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2541_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 47899414 - 47899649
Alignment:
| Q |
13 |
aaggcaagaaaaacaaccagttaccatgaagcatgaacttaccaagtaggatggcaggtactaaggtctgtaataacagtgacaaaaataactttctttt |
112 |
Q |
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| T |
47899414 |
aaggcaagaaaaacaaccagttaccatgaagcatgaacttaccaagtaggatggcaggtactaaggtctgtaataacagtgacaaaaataactttctttt |
47899513 |
T |
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| Q |
113 |
ccaaaccttgccacttcaaaacccatagtggaatatgttgcatcatgggatggacgctgattataatatctggcttgtattccatcaaccctgcctccac |
212 |
Q |
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| T |
47899514 |
ccaaaccttgccacttcaaaacccatagtggaatatgttgcatcatgggatggacgctgattataatatctggcttgtattccatcaaccctgcctccac |
47899613 |
T |
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| Q |
213 |
ctctctgaaaattacagtacaatgacagtttgtcaa |
248 |
Q |
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| T |
47899614 |
ctctctgaaaattacagtacaatgacagtttgtcaa |
47899649 |
T |
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