View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2541_high_3 (Length: 530)
Name: NF2541_high_3
Description: NF2541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2541_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 189 - 516
Target Start/End: Original strand, 32551311 - 32551638
Alignment:
| Q |
189 |
caatttcagaaaggctttaaaaatgtcaatgttttctgaaagaggtaaggggtttgggggtctgaaattttattttattttccaaagataatttcgatga |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32551311 |
caatttcagaaaggctttaaaaatgtcaatgttttctgaaagaggtaaggggtttgggggtctgaaattttattttattttcctaagataatttcgatga |
32551410 |
T |
|
| Q |
289 |
acaggtagagaggtatattggtgcgactgttaccatggtctgatgccatagctggtgtcgttgcaaaagttcatacccgtgattgaagatcagacctcaa |
388 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32551411 |
acaggtagagaggtatattggtgtgactgttacaatggtctgatgcgatagctggtgtcgttgcaaaagttcatacccgtgattgaagatcagacctcaa |
32551510 |
T |
|
| Q |
389 |
ttgcagtgtgatgcaattgcggttgcatgaacacagcgaacagcgtgatttgttgtacagacgtcttgaaaacattctttgaagtacaaaaagtaactag |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||| |||||||||||||||||||||||||| |
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| T |
32551511 |
ttgcagtgtgatgcaattgcggttgcatgaacacagcgaacaacgtaatttgttgcacggacgtcttgaaaacgttctttgaagtacaaaaagtaactag |
32551610 |
T |
|
| Q |
489 |
cgatgatggagttggcacaggtggaggc |
516 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32551611 |
cgatgatggagttggcacaggtggaggc |
32551638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 32551126 - 32551261
Alignment:
| Q |
6 |
tttggggaagttgcatatgcttcccgatacaacttctacgtgtttgctacttctggtctataatattacactgtacaattttaatttcattgctgctaga |
105 |
Q |
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| T |
32551126 |
tttggggaagttgcatatgcttcccgatacaacttctacgtatttgctacttctggtctataatattacactgcacaattttaatttcattgctgctaga |
32551225 |
T |
|
| Q |
106 |
attaatattttatgtgtgctcttactttaatttgta |
141 |
Q |
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||||||||||||||||| ||||||||||||||||| |
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| T |
32551226 |
cttaatattttatgtgtgttcttactttaatttgta |
32551261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 326 - 410
Target Start/End: Complemental strand, 40577404 - 40577320
Alignment:
| Q |
326 |
gtctgatgccatagctggtgtcgttgcaaaagttcatacccgtgattgaagatcagacctcaattgcagtgtgatgcaattgcgg |
410 |
Q |
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||||||||| ||||| ||| |||||| ||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40577404 |
gtctgatgcggtagctagtgccgttgcgaaagttcgtacacgtgattgaagatcagaccgcaattgcagtgtgatgcaattgcgg |
40577320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 40542525 - 40542416
Alignment:
| Q |
1 |
taatatttggggaagttgcatatgcttcccgatacaacttctacgtgtttgctacttctggtctataatattacactgtacaattttaatttcattgctg |
100 |
Q |
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||||||||| |||||| | ||| ||||||| ||||| | |||| | |||||||||| |||||| |||||||| | ||||||||||||||||||| ||| |
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| T |
40542525 |
taatatttgtggaagtgtcttattcttcccggtacaattgctacttatttgctacttatggtctgtaatattattccgtacaattttaatttcattactg |
40542426 |
T |
|
| Q |
101 |
ctagaattaa |
110 |
Q |
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|||| |||| |
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| T |
40542425 |
ttagacttaa |
40542416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 7780193 - 7780056
Alignment:
| Q |
1 |
taatatttggggaagttgcatatgcttcccgatacaacttctacgtgtttgctacttctggtctataatattacactgtacaattttaatttcattgctg |
100 |
Q |
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||||||||||||||||| ||||||| ||||||||| | |||| | |||||||||| |||||| ||| |||| | ||| ||||||||||||||| ||| |
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| T |
7780193 |
taatatttggggaagtttgttatgctttccgatacaattgctacttatttgctacttatggtctgtaacattattccgtataattttaatttcattactg |
7780094 |
T |
|
| Q |
101 |
ctagaattaatattttatgtgtgctcttactttaattt |
138 |
Q |
| |
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|||| |||||||||| || ||||| |||||||||||| |
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| T |
7780093 |
ttagacttaatattttgtgggtgctattactttaattt |
7780056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 3795738 - 3795875
Alignment:
| Q |
1 |
taatatttggggaagttgcatatgcttcccgatacaacttctacgtgtttgctacttctggtctataatattacactgtacaattttaatttcattgctg |
100 |
Q |
| |
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||||||| ||||||||| ||||||||| |||||| | |||| | |||||||||| |||||||||| |||| | || |||||||||||||| ||| |
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| T |
3795738 |
taatattcggggaagtttgttatgcttcctaatacaattgctacttatttgctacttatggtctataacattattccctatgattttaatttcattactg |
3795837 |
T |
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| Q |
101 |
ctagaattaatattttatgtgtgctcttactttaattt |
138 |
Q |
| |
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| || |||||||||| || ||||| |||||||||||| |
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| T |
3795838 |
ttggacttaatattttgtgggtgctattactttaattt |
3795875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 6659622 - 6659485
Alignment:
| Q |
1 |
taatatttggggaagttgcatatgcttcccgatacaacttctacgtgtttgctacttctggtctataatattacactgtacaattttaatttcattgctg |
100 |
Q |
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|
||||||||||||||||| ||||||||| ||||||| | |||| | |||||||||| |||||||||| |||| | || |||||||||||||| ||| |
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| T |
6659622 |
taatatttggggaagtttgttatgcttcctgatacaattgctacttatttgctacttatggtctataacattattccctatgattttaatttcattactg |
6659523 |
T |
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| Q |
101 |
ctagaattaatattttatgtgtgctcttactttaattt |
138 |
Q |
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| || |||||||||| || ||||| |||||||||||| |
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| T |
6659522 |
ttggacttaatattttgtgggtgctattactttaattt |
6659485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 6052310 - 6052177
Alignment:
| Q |
1 |
taatatttggggaagttgcatatgcttcccgatacaacttctacgtgtttgctacttctggtctataatattacactgtacaattttaatttcattgctg |
100 |
Q |
| |
|
||||||||||||||||| | ||| ||||||| |||||||||||| | |||| ||||| || | || || ||| ||||||||||||||||| || || |
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| T |
6052310 |
taatatttggggaagtttcttatacttcccggtacaacttctacctatttgatacttatgatatagtat-tta----gtacaattttaatttcaatgttg |
6052216 |
T |
|
| Q |
101 |
ctagaattaatattttatgtgtgctcttactttaatttg |
139 |
Q |
| |
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|| || |||||||||||||||||| ||||||||||||| |
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| T |
6052215 |
cttgacctaatattttatgtgtgctattactttaatttg |
6052177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 23450538 - 23450675
Alignment:
| Q |
1 |
taatatttggggaagttgcatatgcttcccgatacaacttctacgtgtttgctacttctggtctataatattacactgtacaattttaatttcattgctg |
100 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||| | |||| | |||||||||| |||||||||| |||| | || |||||||||||||| ||| |
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| T |
23450538 |
taatatttgggaaagtttgttatgcttcgtgatacaattgctacttatttgctacttatggtctataacattattccctatgattttaatttcattactg |
23450637 |
T |
|
| Q |
101 |
ctagaattaatattttatgtgtgctcttactttaattt |
138 |
Q |
| |
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| || |||||||||| || ||||| |||||||||||| |
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|
| T |
23450638 |
ttggacttaatattttgtgggtgctattactttaattt |
23450675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 14606929 - 14606988
Alignment:
| Q |
78 |
gtacaattttaatttcattgctgctagaattaatattttatgtgtgctcttactttaatttg |
139 |
Q |
| |
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||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||||||| |
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| T |
14606929 |
gtacaattttaatttcaatgctgctaga--caatattttatatgtgctattactttaatttg |
14606988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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