View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2541_high_7 (Length: 320)

Name: NF2541_high_7
Description: NF2541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2541_high_7
NF2541_high_7
[»] chr6 (8 HSPs)
chr6 (101-309)||(6458396-6458604)
chr6 (151-290)||(6466372-6466511)
chr6 (142-290)||(6472031-6472179)
chr6 (142-290)||(6506525-6506673)
chr6 (115-290)||(6529238-6529413)
chr6 (199-290)||(6519618-6519709)
chr6 (199-290)||(6497712-6497803)
chr6 (196-290)||(6460866-6460960)
[»] chr7 (3 HSPs)
chr7 (151-299)||(3752828-3752976)
chr7 (199-296)||(4047265-4047362)
chr7 (142-290)||(9664291-9664439)
[»] chr4 (1 HSPs)
chr4 (142-290)||(13535315-13535463)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 101 - 309
Target Start/End: Complemental strand, 6458604 - 6458396
Alignment:
Q  101 agcaaccgacaaatactccttttctcttccctcaagtccactccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6458604 agcaaccgacaaatactccttttctcttccctcaagtccactccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccact 6458505  T
Q  201 cccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactcctccctctcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6458504 cccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaacttctccctctcc 6458405  T
Q  301 ctatgctac 309  Q
    || ||||||    
T  6458404 ctctgctac 6458396  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 6466511 - 6466372
Alignment:
Q  151 ctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacac 250  Q
    ||||| |||||  |||||||||||||||| ||||| || ||  | || ||||| |||||||||||||||||||| ||||||||  |||||||||||  ||    
T  6466511 ctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaac 6466412  T
Q  251 ctgagtacattcacccttacctcatcaaatcctcaaactc 290  Q
    |||| |||||||| || || ||||||||||| ||||||||    
T  6466411 ctgaatacattcatccatatctcatcaaatcttcaaactc 6466372  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 290
Target Start/End: Original strand, 6472031 - 6472179
Alignment:
Q  142 tccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatg 241  Q
    |||||| ||||||| ||||| || || |||||||| || ||| | || ||  | || ||||| ||||||||||||||||||||  |||| ||| ||||||    
T  6472031 tccactgttctccctgacccctccaaattcttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaacattgtcctaaaaaatg 6472130  T
Q  242 gtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 290  Q
    |||||  |||||| |||||||| ||||||||||||||||| ||||||||    
T  6472131 gtgaccaacctgaatacattcatccttacctcatcaaatcatcaaactc 6472179  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 290
Target Start/End: Complemental strand, 6506673 - 6506525
Alignment:
Q  142 tccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatg 241  Q
    |||||| | ||||| ||||| || || ||||||||||| ||||| || ||  | || || || |||||||||||||||||||| ||||||||  | ||||    
T  6506673 tccactgtcctccctgacccctccaaattcttctctccaaatctgctatccacacccctgcctacaaactctttcttccaaaactttgttctcaacaatg 6506574  T
Q  242 gtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 290  Q
    ||||  ||||||| ||| |||| ||||||||||||||||| ||||||||    
T  6506573 gtgatgcacctgaatactttcatccttacctcatcaaatcatcaaactc 6506525  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 290
Target Start/End: Complemental strand, 6529413 - 6529238
Alignment:
Q  115 actccttttctcttccctcaagtccactccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctt 214  Q
    |||| |||||| ||||| ||||   |||||||| | || || ||||| || || ||||||||||| ||||| || ||  | || ||||| ||||||||||    
T  6529413 actcattttctattcccacaaggtaactccactgtccttcctgacccctccaaattcttctctccaaatctgctatccacacccctccctacaaactctt 6529314  T
Q  215 tcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 290  Q
    |||||||||| ||||||||  | |||||||||  |||||| |||||||| || || ||||||||||| ||| ||||    
T  6529313 tcttccaaaactttgttctcaacaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcagactc 6529238  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 290
Target Start/End: Original strand, 6519618 - 6519709
Alignment:
Q  199 ctcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 290  Q
    ||||| |||||||||||||||||||| ||||||||  |||| ||||||  |||||| || ||||| || |||||||| ||||| ||||||||    
T  6519618 ctccctacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatatattcatccatacctcattaaatcatcaaactc 6519709  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 290
Target Start/End: Complemental strand, 6497803 - 6497712
Alignment:
Q  199 ctcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 290  Q
    ||||| |||||||||||||||||||| ||||||||  | || ||||||  |||||| ||  |||| ||||||||||||||||| ||| ||||    
T  6497803 ctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaatcatcagactc 6497712  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 290
Target Start/End: Original strand, 6460866 - 6460960
Alignment:
Q  196 ccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 290  Q
    |||||||| |||||||| ||||||||||| ||||||||  | |||||||||  ||| || ||| |||| ||||||||||||| ||| || |||||    
T  6460866 ccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatcagatcttccaactc 6460960  T

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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 299
Target Start/End: Original strand, 3752828 - 3752976
Alignment:
Q  151 ctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacac 250  Q
    |||||| ||||||||||||||||||| |  || || || ||  | || ||||| |||||||||||||||||||| |||||||| || |||||||||||||    
T  3752828 ctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacac 3752927  T
Q  251 ctgagtacattcacccttacctcatcaaatcctcaaactcctccctctc 299  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  3752928 ctgaatacattcacccttacctcatcaaatcctcaaacttttccctctc 3752976  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 199 - 296
Target Start/End: Complemental strand, 4047362 - 4047265
Alignment:
Q  199 ctcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactcctccct 296  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||   || ||| |||||||||||||||||  |||||||||||||||| |||||    
T  4047362 ctccctacaaactcattcttccaaaattttgttctacaaaatggtgatcaacatgaatacattcacccttaccttgtcaaatcctcaaactcttccct 4047265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 290
Target Start/End: Original strand, 9664291 - 9664439
Alignment:
Q  142 tccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatg 241  Q
    |||||| | ||||| || ||||| || ||||||||||| |||||||| ||  | || ||||| |||||||||||||||||||| ||||||||  ||||||    
T  9664291 tccactctcctccccgaaccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatg 9664390  T
Q  242 gtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 290  Q
    |||||  |  ||| |||||||||||||| ||| ||||||| || |||||    
T  9664391 gtgaccaatatgaatacattcacccttatctcgtcaaatcgtcgaactc 9664439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 290
Target Start/End: Original strand, 13535315 - 13535463
Alignment:
Q  142 tccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatg 241  Q
    |||||| | ||||| || ||||| || ||||||||||| |||||||| ||  | || ||||| |||||||||||||||||||| ||||||||  ||||||    
T  13535315 tccactctcctccccgaaccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatg 13535414  T
Q  242 gtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 290  Q
    |||||  |  ||| |||||||||||||| ||| ||||||| || |||||    
T  13535415 gtgaccaatatgaatacattcacccttatctcgtcaaatcgtcgaactc 13535463  T

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