View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2541_low_17 (Length: 242)

Name: NF2541_low_17
Description: NF2541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2541_low_17
NF2541_low_17
[»] chr4 (1 HSPs)
chr4 (10-227)||(53351680-53351897)
[»] chr5 (7 HSPs)
chr5 (16-69)||(26033338-26033391)
chr5 (126-217)||(26033391-26033484)
chr5 (182-217)||(38180772-38180807)
chr5 (182-217)||(38190324-38190359)
chr5 (182-217)||(38207996-38208031)
chr5 (182-217)||(38217549-38217584)
chr5 (182-217)||(38456132-38456167)
[»] chr1 (2 HSPs)
chr1 (138-219)||(38342533-38342621)
chr1 (138-219)||(38446726-38446814)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 53351680 - 53351897
Alignment:
Q  10 agaagaaatacaaattaatgacatgatcaccaaaataatcaacaaggtataacacaagtggtaaaccctaaattgcacaatgtgtgatctaacgaatatg 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53351680 agaacaaatacaaattaatgacatgatcaccaaaataatcaacaaggtataacacaagtggtaaaccctaaattgcacaatgtgtgatctaacgaatatg 53351779  T
Q  110 gttgcaattgtagaaggatagataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaacctcttgagccagcttagaccatttga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53351780 gttgcaattgtagaaggatagataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaacctcttgagccagcttagaccatttga 53351879  T
Q  210 attcaccaaagttgttaa 227  Q
    ||||||||||||||||||    
T  53351880 attcaccaaagttgttaa 53351897  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 26033338 - 26033391
Alignment:
Q  16 aatacaaattaatgacatgatcaccaaaataatcaacaaggtataacacaagtg 69  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  26033338 aatacaaattaatgacatgatcaacaaaataatcaacaaggtaaaacacaagtg 26033391  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 26033391 - 26033484
Alignment:
Q  126 gatagataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaa---cctcttgagccagcttagaccatttgaattcacca 217  Q
    ||||||| |||||||||||| ||| |||   ||||||||||||||||||| |  |||   |||| | ||||||||||||||||||||||||||||    
T  26033391 gatagatcaatatttcaaattaaagaaagt-aaaagaagtaaagcatgaataagaaattacctcctcagccagcttagaccatttgaattcacca 26033484  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 38180807 - 38180772
Alignment:
Q  182 acctcttgagccagcttagaccatttgaattcacca 217  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38180807 acctcatgagccagcttagaccatttgaattcacca 38180772  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 38190324 - 38190359
Alignment:
Q  182 acctcttgagccagcttagaccatttgaattcacca 217  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38190324 acctcatgagccagcttagaccatttgaattcacca 38190359  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 38208031 - 38207996
Alignment:
Q  182 acctcttgagccagcttagaccatttgaattcacca 217  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38208031 acctcatgagccagcttagaccatttgaattcacca 38207996  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 38217549 - 38217584
Alignment:
Q  182 acctcttgagccagcttagaccatttgaattcacca 217  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38217549 acctcatgagccagcttagaccatttgaattcacca 38217584  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 38456167 - 38456132
Alignment:
Q  182 acctcttgagccagcttagaccatttgaattcacca 217  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38456167 acctcatgagccagcttagaccatttgaattcacca 38456132  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 38342621 - 38342533
Alignment:
Q  138 tttcaaataaaacaaaaagaaaag----aagtaaagcatgaagataaa---acctcttgagccagcttagaccatttgaattcaccaaa 219  Q
    |||||||||||| |||||||||||    |||||||||||||| | |||   |||||  |||||| ||||||||||||||| ||||||||    
T  38342621 tttcaaataaaagaaaaagaaaaggaagaagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaa 38342533  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 38446814 - 38446726
Alignment:
Q  138 tttcaaataaaacaaaaagaaaag----aagtaaagcatgaagataaa---acctcttgagccagcttagaccatttgaattcaccaaa 219  Q
    |||||||||||| |||||||||||    |||||||||||||| | |||   |||||  |||||| ||||||||||||||| ||||||||    
T  38446814 tttcaaataaaagaaaaagaaaaggaagaagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaa 38446726  T

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