View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2541_low_18 (Length: 237)
Name: NF2541_low_18
Description: NF2541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2541_low_18 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 29 - 237
Target Start/End: Original strand, 42466524 - 42466737
Alignment:
| Q |
29 |
atttcccttttatctaatcgtcttttacttatatgttgattcagaaatctaaagatatgcttaaa------gtcttaaattaaattaactcatagcactc |
122 |
Q |
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| T |
42466524 |
atttcccttttatctaatcgtattttacttatatgttgattcagaa-tctaaagatatgcttaacaggcaggtcttaaattaaattaactcatcacactc |
42466622 |
T |
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| Q |
123 |
cctccttattaactaatttgtctaattaccttctcataatgctcaccctgtccatcctaaatttaaaaacaagggaaagaagaaacacatgctatgggta |
222 |
Q |
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| T |
42466623 |
cctccttattaactaatttgtctaattaccttctcataatgctcaccctgcccatcctaaatttaaaaacaagggaaagaagaaacacatgctatgggta |
42466722 |
T |
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| Q |
223 |
aattttacctttcct |
237 |
Q |
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| T |
42466723 |
aattttacctttcct |
42466737 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 41955111 - 41955040
Alignment:
| Q |
138 |
atttgtctaattaccttctcataatgctcaccctgtccatcctaaatttaaaaacaagggaaagaagaaacac |
210 |
Q |
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| T |
41955111 |
atttgtctaatttccttttcagaatgctcctcctccccatcctaa-tttaaaaaccagggaaagaagaaacac |
41955040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 1215304 - 1215233
Alignment:
| Q |
138 |
atttgtctaattaccttctcataatgctcaccctgtccatcctaaatttaaaaacaagggaaagaagaaacac |
210 |
Q |
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| T |
1215304 |
atttgtctaatttccttttcagaatgctcctcctccccatcctaa-tttaataaccagggaaagaagaaacac |
1215233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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