View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2541_low_5 (Length: 434)
Name: NF2541_low_5
Description: NF2541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2541_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 39289751 - 39289345
Alignment:
| Q |
18 |
ctttaacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgaacttttttaatacttaaccaaggaatcataatgag |
117 |
Q |
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| T |
39289751 |
ctttaacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgtacttttttaatacttaaccaaggaatcataatgag |
39289652 |
T |
|
| Q |
118 |
aattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaacgaggctcgtaacttatagtaaga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||| || ||||||||||||||| |
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| T |
39289651 |
aattgtgatagctaaagtgaaccaacattcttgtttcttaaccatctttaaaatggttaagtgataggtttttgaactaggttcataacttatagtaaga |
39289552 |
T |
|
| Q |
218 |
agaatgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctg |
317 |
Q |
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| T |
39289551 |
agaatgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctg |
39289452 |
T |
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| Q |
318 |
cgagcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgag |
417 |
Q |
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| T |
39289451 |
caagcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgag |
39289352 |
T |
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| Q |
418 |
agaataa |
424 |
Q |
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||||||| |
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| T |
39289351 |
agaataa |
39289345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 39296631 - 39296229
Alignment:
| Q |
18 |
ctttaacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgaacttttttaatacttaaccaaggaatcataatgag |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39296631 |
ctttaacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgtacttttttaatacttaaccaaggaatcataatgag |
39296532 |
T |
|
| Q |
118 |
aattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaacgaggctcgtaacttatagtaaga |
217 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | | |
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| T |
39296531 |
aattgtgatagctaaagtgaaccaacactcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaactaggctcacaacttactgttaaa |
39296432 |
T |
|
| Q |
218 |
agaatgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagctg |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||| ||||||| |||||||||| |
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| T |
39296431 |
agaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacgttgtggtgaagatgacgaataaaaggaaaagctg |
39296332 |
T |
|
| Q |
318 |
cgagcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacgag |
417 |
Q |
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|||||||| |||||||| ||| ||||| |||||||||||||| ||||| ||||| ||||||| || ||| |||||| || |||||||||| ||||| |
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| T |
39296331 |
agagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag---tgttttcatcgttgtttgtgatcgtgagaacgag |
39296235 |
T |
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| Q |
418 |
agaata |
423 |
Q |
| |
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|||||| |
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|
| T |
39296234 |
agaata |
39296229 |
T |
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