View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2541_low_8 (Length: 339)

Name: NF2541_low_8
Description: NF2541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2541_low_8
NF2541_low_8
[»] chr5 (12 HSPs)
chr5 (186-321)||(5273318-5273455)
chr5 (25-89)||(36037934-36037998)
chr5 (34-89)||(15696929-15696984)
chr5 (36-89)||(35763035-35763088)
chr5 (49-89)||(12375846-12375886)
chr5 (109-149)||(12374696-12374737)
chr5 (109-148)||(33406337-33406377)
chr5 (50-89)||(15695783-15695822)
chr5 (109-148)||(15697002-15697040)
chr5 (24-86)||(33406235-33406296)
chr5 (109-149)||(15695720-15695761)
chr5 (54-87)||(35762282-35762315)
[»] chr2 (13 HSPs)
chr2 (16-89)||(4631536-4631610)
chr2 (24-89)||(8288768-8288833)
chr2 (27-81)||(27299897-27299951)
chr2 (24-89)||(27299244-27299309)
chr2 (30-86)||(7086644-7086700)
chr2 (24-89)||(8292374-8292439)
chr2 (109-150)||(8292466-8292507)
chr2 (109-148)||(4632484-4632523)
chr2 (35-86)||(31669745-31669796)
chr2 (109-149)||(4631471-4631512)
chr2 (24-73)||(32342070-32342119)
chr2 (32-74)||(7088248-7088290)
chr2 (112-148)||(8288708-8288745)
[»] chr4 (20 HSPs)
chr4 (16-81)||(31906572-31906638)
chr4 (16-81)||(39719211-39719277)
chr4 (25-89)||(36518779-36518843)
chr4 (24-79)||(31905691-31905746)
chr4 (24-83)||(2318911-2318970)
chr4 (24-86)||(2318219-2318281)
chr4 (24-86)||(43631239-43631301)
chr4 (22-86)||(35305776-35305839)
chr4 (30-86)||(44802776-44802832)
chr4 (35-78)||(43633080-43633123)
chr4 (39-89)||(20215242-20215292)
chr4 (24-86)||(25597273-25597335)
chr4 (109-150)||(31905613-31905655)
chr4 (24-81)||(13210582-13210638)
chr4 (30-86)||(44804585-44804641)
chr4 (109-144)||(35305716-35305751)
chr4 (109-150)||(36518864-36518906)
chr4 (24-85)||(35307109-35307169)
chr4 (116-148)||(35307201-35307233)
chr4 (109-148)||(43631176-43631216)
[»] chr6 (8 HSPs)
chr6 (16-89)||(13001080-13001154)
chr6 (109-149)||(13000369-13000409)
chr6 (52-89)||(13000427-13000464)
chr6 (24-81)||(17199407-17199463)
chr6 (24-81)||(30260265-30260321)
chr6 (29-81)||(15717439-15717490)
chr6 (29-81)||(17199302-17199353)
chr6 (24-56)||(20821189-20821221)
[»] chr1 (10 HSPs)
chr1 (25-86)||(49914343-49914404)
chr1 (24-81)||(34661721-34661777)
chr1 (31-86)||(40289721-40289775)
chr1 (35-86)||(49911754-49911805)
chr1 (27-81)||(34660668-34660721)
chr1 (36-89)||(27054106-27054159)
chr1 (31-86)||(36687175-36687229)
chr1 (37-86)||(14516997-14517045)
chr1 (36-89)||(46501886-46501939)
chr1 (109-148)||(49914430-49914470)
[»] chr8 (5 HSPs)
chr8 (24-81)||(11918710-11918766)
chr8 (31-86)||(24954169-24954223)
chr8 (24-81)||(13904223-13904279)
chr8 (36-89)||(33110721-33110776)
chr8 (24-81)||(13907232-13907288)
[»] chr7 (6 HSPs)
chr7 (25-86)||(27251462-27251523)
chr7 (36-89)||(48067121-48067174)
chr7 (109-148)||(27255054-27255093)
chr7 (35-86)||(27266409-27266460)
chr7 (31-86)||(46890260-46890314)
chr7 (35-86)||(27254980-27255031)
[»] chr3 (11 HSPs)
chr3 (24-84)||(35343376-35343435)
chr3 (24-81)||(36591100-36591156)
chr3 (31-87)||(49082279-49082334)
chr3 (111-150)||(39506765-39506804)
chr3 (31-86)||(49081435-49081489)
chr3 (24-70)||(37472148-37472194)
chr3 (24-86)||(39506663-39506724)
chr3 (24-81)||(30162293-30162349)
chr3 (24-73)||(35344192-35344241)
chr3 (24-81)||(36590010-36590066)
chr3 (24-81)||(42596828-42596884)
[»] scaffold0018 (1 HSPs)
scaffold0018 (24-75)||(122239-122289)


Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 186 - 321
Target Start/End: Original strand, 5273318 - 5273455
Alignment:
Q  186 aaaattgcattactaccctcaactttcaactgatttagaaatcgcgcgccacttcttcgtctttacactgaca--ctcttctgatctcaagtacaacgat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  5273318 aaaattgcattactaccctcaactttcaactgatttagaaatcgcgcgccacttcttcgtctttacactgacactctcttctgatctcaagcacaacgat 5273417  T
Q  284 ggcgtgcactcgcactccacaatcttcttggtttcttc 321  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  5273418 ggcgtgcactcgcactcctcaatcttcttcgtttcttc 5273455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 36037934 - 36037998
Alignment:
Q  25 agtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  36037934 agtcatgatgtgacatgtgtcagagcggcggctcattcccgccgtttcaaagggcgggaatgagg 36037998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 15696929 - 15696984
Alignment:
Q  34 gtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| ||| |||||||    
T  15696929 gtgacgtgtgtcagaatggcggctcattcccgccgtttcaaatgacgggaatgagg 15696984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 35763035 - 35763088
Alignment:
Q  36 gacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    |||||||||||||  || |||||||||||||||||||||||||||| |||||||    
T  35763035 gacatgtgtcagagagggggctcattcccgccgtttcaaatggcgggaatgagg 35763088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 12375846 - 12375886
Alignment:
Q  49 acggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  12375846 acggcggctcattcccgccgtttcaaatggcgggaatgagg 12375886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 12374737 - 12374696
Alignment:
Q  109 gggtcattttggtgaataattttcata-ggggtcagacatgg 149  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  12374737 gggtcattttggtgaataattttcatagggggtcagacatgg 12374696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 33406337 - 33406377
Alignment:
Q  109 gggtcattttggtgaataattttcatagggg-tcagacatg 148  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  33406337 gggtcattttggtgaataattttcataggggatcagacatg 33406377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 15695822 - 15695783
Alignment:
Q  50 cggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  15695822 cggcggctcattcccgccgtttcaaatggcaggaatgagg 15695783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 15697002 - 15697040
Alignment:
Q  109 gggtcattttggtgaataattttcataggggtcagacatg 148  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  15697002 gggtcattttggtgaataattttcata-gggtcagacatg 15697040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 33406235 - 33406296
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||||| ||| ||||||||||||||  | ||||||||||||||||| ||||||||||| ||||    
T  33406235 cagtcaggatttgacatgtgtcagagag-cggctcattcccgccgtatcaaatggcgggaatg 33406296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 15695761 - 15695720
Alignment:
Q  109 gggtcattttggtgaataattttcat-aggggtcagacatgg 149  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  15695761 gggtcattttggtgaataattttcataaagggtcagacatgg 15695720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 35762315 - 35762282
Alignment:
Q  54 ggctcattcccgccgtttcaaatggcggaaatga 87  Q
    |||||||||||||||||||||||||||| |||||    
T  35762315 ggctcattcccgccgtttcaaatggcgggaatga 35762282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 4631610 - 4631536
Alignment:
Q  16 atagctggc-agtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  4631610 atagctggccagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcaggaatgagg 4631536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 8288833 - 8288768
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  8288833 cagtcacgatgtgacgtgtgtcagaacggcggctcattcccgccatttcaaatggcgggaatgagg 8288768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 27299897 - 27299951
Alignment:
Q  27 tcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27299897 tcacgatgtgacatgtgtcagaacggcggctcattcccgtcgtttcaaatggcgg 27299951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 27299309 - 27299244
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||    
T  27299309 cagtcacgatgtgacatgtgtcagaaaggcggctcatttccgccgtttgaaatggcgggaatgagg 27299244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 7086700 - 7086644
Alignment:
Q  30 cgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  7086700 cgatgtgacgtgtgtcagaacggcggctcattcccgccgtttcaattggcgggaatg 7086644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 8292374 - 8292439
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| | |||||||    
T  8292374 cagtcacgatgtgacttgtgtcagaacagcggctcattctcgccgtttcaaaaggcaggaatgagg 8292439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 8292466 - 8292507
Alignment:
Q  109 gggtcattttggtgaataattttcataggggtcagacatgga 150  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  8292466 gggtcattttggtaaataattttcataggggtcagacatgga 8292507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 4632484 - 4632523
Alignment:
Q  109 gggtcattttggtgaataattttcataggggtcagacatg 148  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  4632484 gggtcattttggtgaataattttcataggggttagacatg 4632523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 31669745 - 31669796
Alignment:
Q  35 tgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||| ||||    
T  31669745 tgacatgtgtcaaagcggcggttcattcccgccgtttcaaatggcgggaatg 31669796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 4631512 - 4631471
Alignment:
Q  109 gggtcattttggtgaataattttcata-ggggtcagacatgg 149  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  4631512 gggtcattttggtgaataattttcatagggggtcagacatgg 4631471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 32342119 - 32342070
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttca 73  Q
    ||||||||||||||||||||||||| ||||||| || ||||| |||||||    
T  32342119 cagtcacgatgtgacatgtgtcagaccggcggcccagtcccgtcgtttca 32342070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 7088248 - 7088290
Alignment:
Q  32 atgtgacatgtgtcagaacggcggctcattcccgccgtttcaa 74  Q
    ||||||| |||||| |||||||||||||||||||| |||||||    
T  7088248 atgtgacgtgtgtcggaacggcggctcattcccgctgtttcaa 7088290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 8288745 - 8288708
Alignment:
Q  112 tcattttggtgaataattttcata-ggggtcagacatg 148  Q
    |||||||||||||||||||||||| |||||||||||||    
T  8288745 tcattttggtgaataattttcatagggggtcagacatg 8288708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 31906572 - 31906638
Alignment:
Q  16 atagctggc-agtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31906572 atagctggccagtcacgatgtgacgtgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 31906638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 39719277 - 39719211
Alignment:
Q  16 atagctggc-agtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39719277 atagctggccagtcacgatgtgacatgtgacagaacggcggctcattcccgccgtttcaaatggcgg 39719211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 36518779 - 36518843
Alignment:
Q  25 agtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  36518779 agtcacgatgtgacttgtgtcagaacggcggctcattcacgccgtttcaaatggcaggaatgagg 36518843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 31905746 - 31905691
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggc 79  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31905746 cagtcgcgatgtgacgtgtgtcagaacggcggctcattcccgccgtttcaaatggc 31905691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 2318911 - 2318970
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaa 83  Q
    |||||| ||| |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  2318911 cagtcatgatttgacatgtgtcagagcggcggctcattcccaccgtttcaaatggcggaa 2318970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 2318281 - 2318219
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  2318281 cagtcaggatttgacatgtgtcagagcggcggctcatttccgccgtttcaaatggcgggaatg 2318219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 43631301 - 43631239
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||||| ||| |||||||||| ||| |||||||||||||||||||||||||| ||||| ||||    
T  43631301 cagtcatgatttgacatgtgtgagagcggcggctcattcccgccgtttcaaagggcgggaatg 43631239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 35305839 - 35305776
Alignment:
Q  22 ggcagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||||||| ||| ||||||||||||||  | ||||||||||||||||||||||||||||| ||||    
T  35305839 ggcagtcaggatttgacatgtgtcagagag-cggctcattcccgccgtttcaaatggcgggaatg 35305776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 44802832 - 44802776
Alignment:
Q  30 cgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||| |||||| ||||    
T  44802832 cgatgtgacgtgtgtcagaacagcggttcattcccgccgtttcaattggcgggaatg 44802776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 43633080 - 43633123
Alignment:
Q  35 tgacatgtgtcagaacggcggctcattcccgccgtttcaaatgg 78  Q
    |||||||||||||| |||||||||||||||||||||| ||||||    
T  43633080 tgacatgtgtcagagcggcggctcattcccgccgttttaaatgg 43633123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 20215242 - 20215292
Alignment:
Q  39 atgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    ||||||||||  || |||||||||||||||||||||||||||| |||||||    
T  20215242 atgtgtcagagagggggctcattcccgccgtttcaaatggcgggaatgagg 20215292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 25597273 - 25597335
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||||| ||| |||||||||||| | |||||||||||||| || |||||||||||||| ||||    
T  25597273 cagtcatgatttgacatgtgtcaaagcggcggctcattcctgctgtttcaaatggcgggaatg 25597335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 31905655 - 31905613
Alignment:
Q  109 gggtcattttggtgaataattttcata-ggggtcagacatgga 150  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  31905655 gggtcattttggtgaataattttcatagggggtcagacatgga 31905613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 13210582 - 13210638
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    |||||||||| ||||| |||||||| |||||| ||| |||||||||||||||||||||    
T  13210582 cagtcacgatctgacacgtgtcagaccggcgg-tcagtcccgccgtttcaaatggcgg 13210638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 44804585 - 44804641
Alignment:
Q  30 cgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||| |||| |||||||||||||||||||||| ||||| |||||| |||||| ||||    
T  44804585 cgatttgacgtgtgtcagaacggcggctcatttccgccatttcaattggcgggaatg 44804641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 35305751 - 35305716
Alignment:
Q  109 gggtcattttggtgaataattttcataggggtcaga 144  Q
    |||||||||||||||||||| |||||||||||||||    
T  35305751 gggtcattttggtgaataatattcataggggtcaga 35305716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 36518864 - 36518906
Alignment:
Q  109 gggtcattttggtgaataattttcata-ggggtcagacatgga 150  Q
    ||||||||||| ||||||||||||||| |||||||||||||||    
T  36518864 gggtcattttgatgaataattttcatagggggtcagacatgga 36518906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 35307109 - 35307169
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaat 85  Q
    |||||| ||| ||||||||||||||  | |||||||||||||||||||| || |||||||||    
T  35307109 cagtcaggatttgacatgtgtcagagag-cggctcattcccgccgtttcgaaaggcggaaat 35307169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 35307201 - 35307233
Alignment:
Q  116 tttggtgaataattttcataggggtcagacatg 148  Q
    ||||||||||||| |||||||||||||||||||    
T  35307201 tttggtgaataatattcataggggtcagacatg 35307233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 43631216 - 43631176
Alignment:
Q  109 gggtcattttggtgaataattttcata-ggggtcagacatg 148  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  43631216 gggtcattttggtgaataatattcatagggggtcagacatg 43631176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 13001080 - 13001154
Alignment:
Q  16 atagctggc-agtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    ||||||||| |||||||||||||||  ||||||||||| |||||||| ||||||||||||||||||| |||||||    
T  13001080 atagctggccagtcacgatgtgacacatgtcagaacggtggctcatttccgccgtttcaaatggcgggaatgagg 13001154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 13000409 - 13000369
Alignment:
Q  109 gggtcattttggtgaataattttcataggggtcagacatgg 149  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  13000409 gggtcattttgatgaataattttcataggggtcagacatgg 13000369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 13000464 - 13000427
Alignment:
Q  52 gcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    |||||||||||||||||||||||||||||| |||||||    
T  13000464 gcggctcattcccgccgtttcaaatggcgggaatgagg 13000427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 17199463 - 17199407
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    |||||| ||||||||| |||||||| |||||||| | |||||||||||||||||||||    
T  17199463 cagtcatgatgtgacacgtgtcagaccggcggct-agtcccgccgtttcaaatggcgg 17199407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 30260321 - 30260265
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    ||||||||||| ||||||||| ||| ||||||| || |||||||||||||||||||||    
T  30260321 cagtcacgatgcgacatgtgttagaccggcggc-caatcccgccgtttcaaatggcgg 30260265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 15717439 - 15717490
Alignment:
Q  29 acgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    ||||||||||| |||||||| |||||||| | |||||||||||||||||||||    
T  15717439 acgatgtgacacgtgtcagaccggcggct-agtcccgccgtttcaaatggcgg 15717490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 17199353 - 17199302
Alignment:
Q  29 acgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    ||||||||||| |||||||| |||||||| | |||||||||||||||||||||    
T  17199353 acgatgtgacacgtgtcagaccggcggct-agtcccgccgtttcaaatggcgg 17199302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 20821221 - 20821189
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggc 56  Q
    ||||||||||||||||||||||||| |||||||    
T  20821221 cagtcacgatgtgacatgtgtcagaccggcggc 20821189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 49914343 - 49914404
Alignment:
Q  25 agtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  49914343 agtcatgatttgacatgtgtcagagcggcggctcattcccgccgtttcaaatggcgggaatg 49914404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 34661721 - 34661777
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||    
T  34661721 cagtcacgatgtgacatgtgtcagaccggcggc-cagtcccgccgtttcaaatggcgg 34661777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 40289775 - 40289721
Alignment:
Q  31 gatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  40289775 gatgggacatgtgtcaga-cggcggctcattcccgccgtttcaaatggcgggaatg 40289721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 49911805 - 49911754
Alignment:
Q  35 tgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  49911805 tgacatgtgtcagagcggctgctcattcccgccgtttcaaatggcgggaatg 49911754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 34660721 - 34660668
Alignment:
Q  27 tcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    |||||||||||||||||||||| ||||||| || |||||||||||||||||||||    
T  34660721 tcacgatgtgacatgtgtcagaccggcggc-cagtcccgccgtttcaaatggcgg 34660668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 27054106 - 27054159
Alignment:
Q  36 gacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    |||||||||||||  || ||||||||||||| ||||||||||||||||||||||    
T  27054106 gacatgtgtcagagagggggctcattcccgctgtttcaaatggcggaaatgagg 27054159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 36687229 - 36687175
Alignment:
Q  31 gatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||| ||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  36687229 gatgggacatgtgtcaga-cggcagctcattcccgccgtttcaaatggcgggaatg 36687175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 14517045 - 14516997
Alignment:
Q  37 acatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||||||||| |||||||||||||||||||||||||||| ||||| ||||    
T  14517045 acatgtgtca-aacggcggctcattcccgccgtttcaaagggcgggaatg 14516997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 46501939 - 46501886
Alignment:
Q  36 gacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    |||||||||||||  || || ||||||||||||||||||||||||| |||||||    
T  46501939 gacatgtgtcagagagggggttcattcccgccgtttcaaatggcgggaatgagg 46501886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 49914430 - 49914470
Alignment:
Q  109 gggtcattttggtgaataattttcata-ggggtcagacatg 148  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  49914430 gggtcattttggtgaataatattcatagggggtcagacatg 49914470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 11918766 - 11918710
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||    
T  11918766 cagtcacgatgtgacatgtgtcagaccggcgg-tcagtcccgccgtttcaaatggcgg 11918710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 24954169 - 24954223
Alignment:
Q  31 gatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  24954169 gatgggacatgtgtcaga-cggcggctcatttccgccgtttcaaatggcgggaatg 24954223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 13904279 - 13904223
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    |||||||||||||||| |||||||| ||||||| || | |||||||||||||||||||    
T  13904279 cagtcacgatgtgacacgtgtcagaccggcggc-cagttccgccgtttcaaatggcgg 13904223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 33110776 - 33110721
Alignment:
Q  36 gacatgtgtcag--aacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    ||||||||||||  || || |||||||||||||||||||||||||||| |||||||    
T  33110776 gacatgtgtcaggtaaagggggctcattcccgccgtttcaaatggcgggaatgagg 33110721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 13907232 - 13907288
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    |||||||||||||||| |||||||| ||||||| || ||||||| ||||||| |||||    
T  13907232 cagtcacgatgtgacacgtgtcagaccggcggc-cagtcccgccctttcaaagggcgg 13907288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 27251523 - 27251462
Alignment:
Q  25 agtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    ||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  27251523 agtcaggatttgacatgtgttagagcggcggctcattcccgccgtttcaaatggcgggaatg 27251462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 48067121 - 48067174
Alignment:
Q  36 gacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatgagg 89  Q
    |||||||||||||  ||||||||||||||||||||||||| ||||| |||||||    
T  48067121 gacatgtgtcagagaggcggctcattcccgccgtttcaaacggcgggaatgagg 48067174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 27255054 - 27255093
Alignment:
Q  109 gggtcattttggtgaataattttcataggggtcagacatg 148  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  27255054 gggtcattttggtgaataatattcataggggtcagacatg 27255093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 27266409 - 27266460
Alignment:
Q  35 tgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||||||||||||| |||||||||||||||||||||| ||||| ||| ||||    
T  27266409 tgacatgtgtcagagcggcggctcattcccgccgttttaaatgtcgggaatg 27266460  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 46890314 - 46890260
Alignment:
Q  31 gatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  46890314 gatgggacgtgtgtcaga-cggcggctcattcccgccgtttcaaatggcgggaatg 46890260  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 27254980 - 27255031
Alignment:
Q  35 tgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||||||||||||| |||| ||||||| ||||||||||||||| || |||||    
T  27254980 tgacatgtgtcagagcggcagctcatttccgccgtttcaaatgtcgaaaatg 27255031  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 35343435 - 35343376
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaa 84  Q
    ||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||    
T  35343435 cagtcacgatgtgacatgtgtcagaccggcggc-cagtcccgtcgtttcaaatggcggaaa 35343376  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 36591100 - 36591156
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    |||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||    
T  36591100 cagtcacgatgtgacacgtgtcagaccggcggc-cagtcccgccgtttcaaatggcgg 36591156  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 49082279 - 49082334
Alignment:
Q  31 gatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatga 87  Q
    |||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  49082279 gatgggacgtgtgtcaga-cggcggctcattcctgccgtttcaaatggcggaaatga 49082334  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 39506765 - 39506804
Alignment:
Q  111 gtcattttggtgaataattttcataggggtcagacatgga 150  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  39506765 gtcattttggtgaataatattcataggggtcagacatgga 39506804  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 49081489 - 49081435
Alignment:
Q  31 gatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  49081489 gatgggacatgtgtca-aacggcggctcattccccccgtttcaaatggcgggaatg 49081435  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 37472194 - 37472148
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtt 70  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||||    
T  37472194 cagtcacgatgtgacatgtgtcagaccggcggcccagtcccgccgtt 37472148  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 39506663 - 39506724
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcggaaatg 86  Q
    |||||| ||| ||||||||||||||  | ||||||||||||||||||||||||||||| ||||    
T  39506663 cagtcaggatttgacatgtgtcagagag-cggctcattcccgccgtttcaaatggcgggaatg 39506724  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 30162349 - 30162293
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    |||||||||||||||| ||||||||  |||||| || |||||||||||||||||||||    
T  30162349 cagtcacgatgtgacacgtgtcagattggcggc-cagtcccgccgtttcaaatggcgg 30162293  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 35344192 - 35344241
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttca 73  Q
    ||||||||||||||||||||||||| ||||||| || |||| ||||||||    
T  35344192 cagtcacgatgtgacatgtgtcagatcggcggcccagtccctccgtttca 35344241  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 36590066 - 36590010
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    |||||||||||||||| |||||||| || ||||| | |||||||||||||||||||||    
T  36590066 cagtcacgatgtgacacgtgtcagaccgacggct-agtcccgccgtttcaaatggcgg 36590010  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 42596828 - 42596884
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaatggcgg 81  Q
    |||||| ||| ||||||||||||||  | |||||||||||||||||||||||||||||    
T  42596828 cagtcaggatttgacatgtgtcagagag-cggctcattcccgccgtttcaaatggcgg 42596884  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 122239 - 122289
Alignment:
Q  24 cagtcacgatgtgacatgtgtcagaacggcggctcattcccgccgtttcaaa 75  Q
    |||||||||||| |||||||||||| |||||| ||| |||||||||||||||    
T  122239 cagtcacgatgtaacatgtgtcagaccggcgg-tcagtcccgccgtttcaaa 122289  T

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