View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2542_high_6 (Length: 239)

Name: NF2542_high_6
Description: NF2542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2542_high_6
NF2542_high_6
[»] chr2 (10 HSPs)
chr2 (1-222)||(19212983-19213203)
chr2 (1-34)||(22523015-22523048)
chr2 (1-37)||(24581017-24581053)
chr2 (7-37)||(35065628-35065658)
chr2 (7-37)||(35281211-35281241)
chr2 (6-35)||(2831215-2831244)
chr2 (4-37)||(19156164-19156197)
chr2 (1-37)||(12126894-12126930)
chr2 (1-37)||(15333154-15333190)
chr2 (1-37)||(44810730-44810766)
[»] chr4 (8 HSPs)
chr4 (110-222)||(50256327-50256439)
chr4 (1-37)||(3299094-3299130)
chr4 (1-37)||(22040675-22040711)
chr4 (1-37)||(28435248-28435284)
chr4 (1-37)||(39489631-39489667)
chr4 (1-37)||(41536947-41536983)
chr4 (1-37)||(50668365-50668401)
chr4 (1-37)||(56551592-56551628)
[»] chr3 (5 HSPs)
chr3 (1-37)||(55126031-55126067)
chr3 (6-39)||(48417865-48417898)
chr3 (1-37)||(20400102-20400138)
chr3 (1-37)||(39779049-39779085)
chr3 (1-37)||(41990584-41990620)
[»] chr8 (3 HSPs)
chr8 (6-40)||(18959179-18959213)
chr8 (1-37)||(4077714-4077750)
chr8 (1-37)||(12800900-12800936)
[»] chr6 (5 HSPs)
chr6 (1-34)||(8217408-8217441)
chr6 (1-37)||(8637437-8637473)
chr6 (1-37)||(15187088-15187124)
chr6 (1-37)||(15473482-15473518)
chr6 (1-37)||(31971554-31971590)
[»] chr1 (10 HSPs)
chr1 (1-37)||(9528022-9528058)
chr1 (1-35)||(16967196-16967230)
chr1 (1-38)||(1824685-1824722)
chr1 (2-39)||(8032656-8032693)
chr1 (6-35)||(16966974-16967003)
chr1 (1-34)||(21341209-21341242)
chr1 (1-37)||(6000143-6000179)
chr1 (1-37)||(8269368-8269404)
chr1 (1-37)||(24695584-24695620)
chr1 (1-37)||(27533268-27533304)
[»] chr7 (1 HSPs)
chr7 (1-36)||(41237925-41237960)
[»] chr5 (7 HSPs)
chr5 (1-35)||(29904446-29904480)
chr5 (7-36)||(3052310-3052339)
chr5 (6-35)||(37614429-37614458)
chr5 (6-35)||(37791165-37791194)
chr5 (1-37)||(13864369-13864405)
chr5 (1-37)||(20721075-20721111)
chr5 (1-37)||(31602825-31602861)
[»] scaffold1120 (1 HSPs)
scaffold1120 (1-37)||(1938-1974)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 19212983 - 19213203
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaacccgggtcacgacnnnnnnnnnnncttactaataactaactaattacatttataatagtctaaaag 100  Q
    |||||||||||||||||||||||||| |||||||||| || ||||||           ||||||||||||||||||||||||||||||||||||||||||    
T  19212983 caatacataatatatgcaaggttcgaagttcaaaccctggccacgacaaaaaaaaaa-cttactaataactaactaattacatttataatagtctaaaag 19213081  T
Q  101 aattatttgtttatgcagttatcagctaaggcagtatatgaagccattgacaagtacaaagtgactcatttttgtgcagcaccagttgtgcttaactcca 200  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19213082 atttatttgtttatgcaggtatcagctaaggcagtatatgaagccattgacaagtacaaagtgactcatttttgtgcagcaccagttgtgcttaactcca 19213181  T
Q  201 taatgaatgccccggctgagga 222  Q
    ||||||||||||||||||||||    
T  19213182 taatgaatgccccggctgagga 19213203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 22523048 - 22523015
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  22523048 caatacataatatatgcaaggttcgaggttcaaa 22523015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24581053 - 24581017
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| ||||||||||||||||||||||||||||||||    
T  24581053 caatgcataatatatgcaaggttcgaggttcaaaccc 24581017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 35065658 - 35065628
Alignment:
Q  7 ataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||||||||||||||||||    
T  35065658 ataatatatgcaaggttcgaggttcaaaccc 35065628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 35281241 - 35281211
Alignment:
Q  7 ataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||||||||||||||||||    
T  35281241 ataatatatgcaaggttcgaggttcaaaccc 35281211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 2831215 - 2831244
Alignment:
Q  6 cataatatatgcaaggttcgaggttcaaac 35  Q
    ||||||||||||||||||||||||||||||    
T  2831215 cataatatatgcaaggttcgaggttcaaac 2831244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 19156197 - 19156164
Alignment:
Q  4 tacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||||||| |||||||||||||    
T  19156197 tacataatatatgcaaggtttgaggttcaaaccc 19156164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12126894 - 12126930
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||| |||||| |||||||||||||    
T  12126894 caatacataatatatgtaaggtttgaggttcaaaccc 12126930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15333154 - 15333190
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    ||||||||||||||||||||||| || ||||||||||    
T  15333154 caatacataatatatgcaaggtttgatgttcaaaccc 15333190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44810730 - 44810766
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||||||||| || |||||||||||    
T  44810730 caatacataatatatgcaaggtccggggttcaaaccc 44810766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 50256439 - 50256327
Alignment:
Q  110 tttatgcagttatcagctaaggcagtatatgaagccattgacaagtacaaagtgactcatttttgtgcagcaccagttgtgcttaactccataatgaatg 209  Q
    ||||||||| ||||||| || |||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  50256439 tttatgcaggtatcagcaaaagcagtatatgaagccattgttaagtacaaagtgactcatttttgtgcagcaccagtggtgcttaactcaataattaatg 50256340  T
Q  210 ccccggctgagga 222  Q
    | |||||||||||    
T  50256339 ctccggctgagga 50256327  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3299130 - 3299094
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| |||||||||||||||||| |||||||||||||    
T  3299130 caatgcataatatatgcaaggtttgaggttcaaaccc 3299094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22040675 - 22040711
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| |||||||||||||||||||| |||||||||||    
T  22040675 caatgcataatatatgcaaggttcggggttcaaaccc 22040711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28435284 - 28435248
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| |||||||||||||||||||| |||||||||||    
T  28435284 caatgcataatatatgcaaggttcggggttcaaaccc 28435248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39489631 - 39489667
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  39489631 caatacatagtatatgcaaggttcggggttcaaaccc 39489667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41536947 - 41536983
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||||||||||||| |||| |||||    
T  41536947 caatacataatatatgcaaggttcgaagttcgaaccc 41536983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 50668365 - 50668401
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||| |||||||| |||||||||||    
T  50668365 caatacataatatatgtaaggttcggggttcaaaccc 50668401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 56551628 - 56551592
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  56551628 caatgcataatatatgcaaggtccgaggttcaaaccc 56551592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 55126031 - 55126067
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  55126031 caatacataatatatgcaaggttcgaggttcaaaccc 55126067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 48417898 - 48417865
Alignment:
Q  6 cataatatatgcaaggttcgaggttcaaacccgg 39  Q
    ||||||||||||||||||||| ||||||||||||    
T  48417898 cataatatatgcaaggttcgaagttcaaacccgg 48417865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20400102 - 20400138
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    ||||||||||||||||||||||  |||||||||||||    
T  20400102 caatacataatatatgcaaggtctgaggttcaaaccc 20400138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39779049 - 39779085
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| |||||||||||||||||||| |||||||||||    
T  39779049 caatgcataatatatgcaaggttcggggttcaaaccc 39779085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41990620 - 41990584
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||||||||| |||||||| |||||    
T  41990620 caatacataatatatgcaaggtccgaggttcgaaccc 41990584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 18959179 - 18959213
Alignment:
Q  6 cataatatatgcaaggttcgaggttcaaacccggg 40  Q
    |||||||||||||||||||||||||||||||||||    
T  18959179 cataatatatgcaaggttcgaggttcaaacccggg 18959213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4077714 - 4077750
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| |||||||||||||||||||| |||||||||||    
T  4077714 caattcataatatatgcaaggttcggggttcaaaccc 4077750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12800936 - 12800900
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||||||||| || |||||||||||    
T  12800936 caatacataatatatgcaaggtccggggttcaaaccc 12800900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8217408 - 8217441
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  8217408 caatacataatatatgcaaggttcgaggttcaaa 8217441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8637473 - 8637437
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  8637473 caatgcataatatatgcaaggtccgaggttcaaaccc 8637437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15187088 - 15187124
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  15187088 caatgcataatatatgcaaggtccgaggttcaaaccc 15187124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15473518 - 15473482
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  15473518 caatgcataatatatgcaaggtccgaggttcaaaccc 15473482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31971554 - 31971590
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  31971554 caatgcataatatatgcaaggtccgaggttcaaaccc 31971590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9528022 - 9528058
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||| ||||||||||||||||||||||||||    
T  9528022 caatacataaaatatgcaaggttcgaggttcaaaccc 9528058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 16967230 - 16967196
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaac 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  16967230 caatgcataatatatgcaaggttcgaggttcaaac 16967196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1824685 - 1824722
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaacccg 38  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  1824685 caatacataatatatgcaaggttcgtggttcgaacccg 1824722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 8032656 - 8032693
Alignment:
Q  2 aatacataatatatgcaaggttcgaggttcaaacccgg 39  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  8032656 aatacataatatatgcaaagttcaaggttcaaacccgg 8032693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 16967003 - 16966974
Alignment:
Q  6 cataatatatgcaaggttcgaggttcaaac 35  Q
    ||||||||||||||||||||||||||||||    
T  16967003 cataatatatgcaaggttcgaggttcaaac 16966974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21341209 - 21341242
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaa 34  Q
    |||| |||||||||||||||||||||||||||||    
T  21341209 caatgcataatatatgcaaggttcgaggttcaaa 21341242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6000179 - 6000143
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  6000179 caatgcataatatatgcaaggtccgaggttcaaaccc 6000143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8269404 - 8269368
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||||||||| || |||||||||||    
T  8269404 caatacataatatatgcaaggtccggggttcaaaccc 8269368  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24695584 - 24695620
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||||||  ||||||||||||||||    
T  24695584 caatacataatatatgcaaaattcgaggttcaaaccc 24695620  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27533268 - 27533304
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| |||||||||||||||||||| |||||||||||    
T  27533268 caatgcataatatatgcaaggttcggggttcaaaccc 27533304  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 41237960 - 41237925
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaacc 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  41237960 caatacgtaatatatgcaaggttcgaggttcaaacc 41237925  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29904446 - 29904480
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaac 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  29904446 caatacataatatatgtaaggttcgaggttcaaac 29904480  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 3052310 - 3052339
Alignment:
Q  7 ataatatatgcaaggttcgaggttcaaacc 36  Q
    ||||||||||||||||||||||||||||||    
T  3052310 ataatatatgcaaggttcgaggttcaaacc 3052339  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 37614458 - 37614429
Alignment:
Q  6 cataatatatgcaaggttcgaggttcaaac 35  Q
    ||||||||||||||||||||||||||||||    
T  37614458 cataatatatgcaaggttcgaggttcaaac 37614429  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 37791194 - 37791165
Alignment:
Q  6 cataatatatgcaaggttcgaggttcaaac 35  Q
    ||||||||||||||||||||||||||||||    
T  37791194 cataatatatgcaaggttcgaggttcaaac 37791165  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13864369 - 13864405
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||||||||| || |||||||||||    
T  13864369 caatacataatatatgcaaggtccggggttcaaaccc 13864405  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20721075 - 20721111
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||||||||||||||||||||| || |||||||||||    
T  20721075 caatacataatatatgcaaggtccggggttcaaaccc 20721111  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31602861 - 31602825
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| |||||||||||||||||||||| |||||||||    
T  31602861 caatgcataatatatgcaaggttcgagattcaaaccc 31602825  T

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Target: scaffold1120 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1938 - 1974
Alignment:
Q  1 caatacataatatatgcaaggttcgaggttcaaaccc 37  Q
    |||| |||||||||||||||||||| |||||||||||    
T  1938 caatgcataatatatgcaaggttcgtggttcaaaccc 1974  T

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