View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2542_high_9 (Length: 235)
Name: NF2542_high_9
Description: NF2542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2542_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 28571473 - 28571255
Alignment:
| Q |
4 |
tattttcacaatatttatacatgttcacttctcttatattctcaaaaattatataagttttaacaatctatttttt-aaattatgacattttctctttat |
102 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28571473 |
tattttcacaaaatttatacatgttcacttctcttatattctcaaaaattatataagttttaacaatctatttttttaaattatgacattttctctttat |
28571374 |
T |
|
| Q |
103 |
cttgttcaaaccctcatcgcattcatctctctgaaaattcatataaacttttgtaattagagaataaatggagtaacttagacttggttgaattttggta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28571373 |
cttgttcaaaccctcatcgcattcatctctctgaaaattcatataaacttttgtaattagagaataaatggagtaacttagacttgattgaattttggta |
28571274 |
T |
|
| Q |
203 |
cgttagagtgagatgatct |
221 |
Q |
| |
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||||||||||||||||||| |
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| T |
28571273 |
cgttagagtgagatgatct |
28571255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 28579066 - 28578848
Alignment:
| Q |
4 |
tattttcacaatatttatacatgttcacttctcttatattctcaaaaattatataagttttaacaatctatttttt-aaattatgacattttctctttat |
102 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28579066 |
tattttcacaaaatttatacatgttcacttctcttatattctcaaaaattatataagttttaacaatctatttttttaaattatgacattttctctttat |
28578967 |
T |
|
| Q |
103 |
cttgttcaaaccctcatcgcattcatctctctgaaaattcatataaacttttgtaattagagaataaatggagtaacttagacttggttgaattttggta |
202 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
28578966 |
cttgttcaaaccctcatcgcattcatctctctgaaaattcatataaacttttgtaattagagaataaatggagtaacttagacttgattgaattttggta |
28578867 |
T |
|
| Q |
203 |
cgttagagtgagatgatct |
221 |
Q |
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||||||||||||||||||| |
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| T |
28578866 |
cgttagagtgagatgatct |
28578848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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