View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2542_low_1 (Length: 418)
Name: NF2542_low_1
Description: NF2542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2542_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 44779536 - 44779929
Alignment:
| Q |
18 |
ataacggtgtttatggtaagttaaaaaatcaaataaaagggattgtgttaaatttctcaaaaattggtggggaacataagtgagggttaccagtgaaata |
117 |
Q |
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| T |
44779536 |
ataacggtgtttatggta-gttaaaaaatcaaataaaagggattgtgttaaatttctcaaaaattggtgggggacataagtgagggttatcggtgaaata |
44779634 |
T |
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| Q |
118 |
agatataatatgttctactttatccaaacagcgaaacataaatttattctattccattaatctaaacatatctgaaagatattaaaggaaaatattataa |
217 |
Q |
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| T |
44779635 |
aaatataatatattccactttatccaaacagcgaaacataaatttattctattccattaatttaaacatatctgaaagatattaaaggaaaatgttataa |
44779734 |
T |
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| Q |
218 |
gaactnnnnnnntacga-nnnnnnnngcagggttcgaaaacaaaaatctatgtgtttatagttactattttcttaattaaccctatgcagtataaagagg |
316 |
Q |
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| T |
44779735 |
gaactaaaaaaatacgattttttttttcagggttcgaaaacaaaaatctatgtatttatagttactattttcttaattaaccctgtacagtataaagagg |
44779834 |
T |
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| Q |
317 |
gacatgttgaaacacacagtgggggcacttgccttcgcaatgctgcatgtagttgaattgnnnnnnnaacaaacaaagatacagttagctcggtc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
44779835 |
gacatgttgaaacacacagtgggggcacttgccttcgcaatgctgcatgtagttgaattgtttttttaacaaacaaagatacacttagctcggtc |
44779929 |
T |
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