View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2542_low_3 (Length: 332)
Name: NF2542_low_3
Description: NF2542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2542_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 4202153 - 4201846
Alignment:
| Q |
15 |
agtaactgctattggcaatggtgaagatgaatttgcttacttggctacagttcatattagtggccatgttttcaaagggtttctctatgatcatggtgtt |
114 |
Q |
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| T |
4202153 |
agtaactgctattggcaatggtgaagatgaatttgcttacttggccacagttcatattagtggccatgttttcaaagggtttctctatgatcatggtgtt |
4202054 |
T |
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| Q |
115 |
gatgggaaaaatccaatgccttgtgtttcagaacttcaattgggaaataattgtagtggaaaaaatggtgaatgttcttctgcaattggtgttcccaaca |
214 |
Q |
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| T |
4202053 |
gatgggaaaaatccaatgccttgtgtttcagaacttcaattgggaaataattgtagtggaaaaaatggtgaatgttcttctgcaattggtgttcccaaca |
4201954 |
T |
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| Q |
215 |
ataatgcttaccctgcttctgctagctagccatgaagattgattatcaggtacataatttgactttgatttgatttaaagttacattttgtaccatattt |
314 |
Q |
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| T |
4201953 |
ataatgcttaccctgcttctgctagctagccatgaagattgattatcaggtacataatttgactttgatttgatttaaagttacattttgtaccatattt |
4201854 |
T |
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| Q |
315 |
gttatatt |
322 |
Q |
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| T |
4201853 |
gttatatt |
4201846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 14513699 - 14513858
Alignment:
| Q |
20 |
ctgctattggcaatggtgaagatgaatttgcttacttggctacagttcatattagtggccatgttttcaaagggtttctctatgatcatggtgttgatgg |
119 |
Q |
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| T |
14513699 |
ctgctattggcaatggtgaagatgaacttgcttacttggccactgtgaatattagtggccatgtatttaaagggtttctctatgatcaaggagttgatga |
14513798 |
T |
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| Q |
120 |
gaaaaat---ccaatgccttgtgtttcagaacttcaattgggaaataattgtagtggaaa |
176 |
Q |
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| T |
14513799 |
caaaaatgaaacaatgccttgtgtttcagaattgcaacttggaagtaatggaagtggaaa |
14513858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 39018461 - 39018419
Alignment:
| Q |
74 |
gtggccatgttttcaaagggtttctctatgatcatggtgttga |
116 |
Q |
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| T |
39018461 |
gtggccatgttttcaaaggttttctttatgatcatggtgttga |
39018419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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