View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2542_low_4 (Length: 324)
Name: NF2542_low_4
Description: NF2542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2542_low_4 |
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| [»] scaffold0042 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 95 - 308
Target Start/End: Complemental strand, 52800484 - 52800271
Alignment:
| Q |
95 |
gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagttacacgagcaagtgaagaaacctcgagaac |
194 |
Q |
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| T |
52800484 |
gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcacgagttcgataagttacatgagcaagtgaagaaacctcgagaac |
52800385 |
T |
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| Q |
195 |
aggttgctgacgctgaagcatttctagatctgacacgcactcttgttgaatccattaaatctcttgtcaacgaaggtgttactccttctcagtttgtttc |
294 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52800384 |
aggttgctgacgctgaagcacttctagatctgacacgcactcttgttggatccgttaaatctcttgtcaacgaaggtgttactccttctcagtttgtttc |
52800285 |
T |
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| Q |
295 |
atctcttctcaaac |
308 |
Q |
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|||||||||||||| |
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| T |
52800284 |
atctcttctcaaac |
52800271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 52800618 - 52800548
Alignment:
| Q |
25 |
ggagcatcaggactccagtatttgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
95 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52800618 |
ggagaatcaggactccagtattcgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
52800548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 99 - 308
Target Start/End: Complemental strand, 31984 - 31775
Alignment:
| Q |
99 |
aaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagttacacgagcaagtgaagaaacctcgagaacaggt |
198 |
Q |
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| T |
31984 |
aaaaagatgatttaatgaacactgcttcggacaagttcgattcaatccttcatgacttcgacaagttagacgagcaagtgaagaagccacaagagcagat |
31885 |
T |
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| Q |
199 |
tgctgacgctgaagcatttctagatctgacacgcactcttgttgaatccattaaatctcttgtcaacgaaggtgttactccttctcagtttgtttcatct |
298 |
Q |
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|| ||||||||||||| |||||||||||||||||||||| |||| ||| |||| ||| | || |||||||| |||||||||||||||||||| |||||| |
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| T |
31884 |
tgttgacgctgaagcacttctagatctgacacgcactctggttggatcggttaactctatggtgaacgaaggggttactccttctcagtttgtgtcatct |
31785 |
T |
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| Q |
299 |
cttctcaaac |
308 |
Q |
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|| ||||||| |
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| T |
31784 |
ctcctcaaac |
31775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 32140 - 32070
Alignment:
| Q |
25 |
ggagcatcaggactccagtatttgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
95 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32140 |
ggagcatcaggactccaacattcgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
32070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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