View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2542_low_5 (Length: 301)
Name: NF2542_low_5
Description: NF2542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2542_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 283
Target Start/End: Complemental strand, 5233348 - 5233084
Alignment:
| Q |
22 |
ataaaatttaaaccatattaatttggtaatttggtagaatcaaataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccat |
121 |
Q |
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| T |
5233348 |
ataaaatttaaaccatattaatttggtaatttggtagaatcaaataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccat |
5233249 |
T |
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| Q |
122 |
tcttctagaacaaccaagacgttcccactcgaactcaaccatgaccgaggaatatgatacctatccaaagatt---nnnnnnnnnnnnnnttactctcat |
218 |
Q |
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| T |
5233248 |
tcttctagaacaaccaagacgttcccactcgaactcaaccatgaccgaggaatatgatacctatccaaagatttaaaaaaaaaaaaaaaattactctcat |
5233149 |
T |
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| Q |
219 |
aatcttcgattacttacatcattattgtaaagtaccacgttatatgaaatcttaccatttctgtg |
283 |
Q |
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| T |
5233148 |
aatcttcgattacttacatcattattgtaaagtaccacgttatatgaaatcttaccatttctgtg |
5233084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 17129208 - 17129075
Alignment:
| Q |
59 |
aatcaaataatcaaactttatgttcttttcaccaatgaaattccagtagggtcacctccccattcttctagaacaaccaagacgttcccactcgaactca |
158 |
Q |
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| T |
17129208 |
aatcaaatgagcacacttcatgttcttttcaccagtgaaattccggtagggtcgcctccccattcttccaacacaaccaagacgttcccgcttgggttca |
17129109 |
T |
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| Q |
159 |
accatgaccgaggaatatgatacctatccaaaga |
192 |
Q |
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| T |
17129108 |
gccatgatcgaggaatatgatacctgtcgaaaga |
17129075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 52546538 - 52546585
Alignment:
| Q |
79 |
tgttcttttcaccaatgaaattccagtagggtcacctccccattcttc |
126 |
Q |
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||||||||||||||| || |||||| |||||||||||||||||||||| |
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| T |
52546538 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttc |
52546585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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