View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2542_low_6 (Length: 247)
Name: NF2542_low_6
Description: NF2542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2542_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 11437555 - 11437783
Alignment:
| Q |
1 |
ttctacataaaggccttaaaaatttcaaatacttttgaaacatgctccttgataatgttctacaccttttcaatgaagggcttctcgaattttctagagg |
100 |
Q |
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| T |
11437555 |
ttctacacaaaggccttaaaaatttcaaatacttttgaaacatgctccttgataatgttctacaccttttcaatgaaggggttcttgaattttctagagg |
11437654 |
T |
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| Q |
101 |
aacgactttatttgttacatgtgatatggaagaagctaaggttgaatttgaatctgaatttgaattagaatttgatgaatcatattcatatggttctata |
200 |
Q |
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| T |
11437655 |
aaccactttatttgttacatgtgatatggaagaagctaaggttgaatttgaatctgaatttgaattagaatttgatgaatcatattcatatggttctata |
11437754 |
T |
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| Q |
201 |
ttcaatgattcaacaaataatggcattaa |
229 |
Q |
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| T |
11437755 |
ttcaatgattcaacaaataatggcattaa |
11437783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 11430214 - 11430424
Alignment:
| Q |
1 |
ttctacataaaggccttaaaaatttcaaatacttttgaaacatgctccttgataatgttctacaccttttcaatgaagggcttctcgaattttctagagg |
100 |
Q |
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||||||| ||||| |||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||| | ||||||| ||| |
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| T |
11430214 |
ttctacacaaagggcttaaaaaattcaaatacttttgaaacattttcctcgataatgttctacaccttttcaatgaaggagttctagggttttctatagg |
11430313 |
T |
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| Q |
101 |
aacgactttatttgttacatgtgatatggaagaagctaaggttgaatttgaatctgaatttgaattagaatttgatgaatcatattcatatggttctata |
200 |
Q |
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| T |
11430314 |
aaccaatttttttggaacatgtgaggatgaacaaggtaaagttgaatttgaatttgaatttgaatta------aatgaatcatattcatatggttcaata |
11430407 |
T |
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| Q |
201 |
ttcaatgattcaacaaa |
217 |
Q |
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| T |
11430408 |
ttcaatgattcaacaaa |
11430424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 11423080 - 11423213
Alignment:
| Q |
27 |
aaatacttttgaaacatgctccttgataatgttctacaccttttcaatgaagggcttctcgaattttctagaggaacgactttatttgttacatgtgat- |
125 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||| | | ||| |||||||||| |||||| ||||| | || || ||||||| |
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| T |
11423080 |
aaatacttttgaaacattctccttgataatgttctacacattttcattattgttattcctgaattttctaaaggaactactttttgtggtatatgtgatg |
11423179 |
T |
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| Q |
126 |
atg--gaagaagctaaggttgaatttgaatctga |
157 |
Q |
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| T |
11423180 |
atgatgaagaagctgatgttgaatttgaatctga |
11423213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 11423198 - 11423264
Alignment:
| Q |
160 |
ttgaattagaatttgatgaatcatattcatatggttctatattcaatgattcaacaaataatggcat |
226 |
Q |
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| T |
11423198 |
ttgaatttgaatctgatgaatcatattcatatggttcagttttcaatgattaaacaaaatatggcat |
11423264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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