View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2543_high_1 (Length: 358)
Name: NF2543_high_1
Description: NF2543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2543_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 3947220 - 3947543
Alignment:
| Q |
17 |
cagtttcagaaggtttgttctcaggctcaatagagacagctgtggcagtttcagaaggtttgttatcaggctcaacagggtcaatagttacagcttctga |
116 |
Q |
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| T |
3947220 |
cagtttcagaaggtttgttctcaggctcaatagagacaactgtggcagtttcagaaggtttgttatcaggctcaacagggtcaatagttacagcttctga |
3947319 |
T |
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| Q |
117 |
aggcttgttttcaggttcagcctcagttgcagtttctgtgggattgttttcaggttctacccagaattcagttttctttccagttttggaaacagtgtca |
216 |
Q |
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| T |
3947320 |
aggcttgttttcaggttcagcctcagttgcagtttctgtgggattgttttcaggttctacccagaattcagttttctttccagttttggaaacagtgtc- |
3947418 |
T |
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| Q |
217 |
aaaaacatcttgtggctttacatttcctttcacagtcactttttgtcccttcatatcaatgtcaaatgattctacacctgtgaagaacaaatgtgttatt |
316 |
Q |
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| T |
3947419 |
aaaaacatcttgtggctttacatttcctttcacagtcactttttgttccttcatatcaatgtcaaatgattctacacctgtgaagaacaaatgtgttatt |
3947518 |
T |
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| Q |
317 |
ttgatacaatattcatagaggatgt |
341 |
Q |
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| T |
3947519 |
ttgatacaatattcatagaggatgt |
3947543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 3947216 - 3947249
Alignment:
| Q |
58 |
gtggcagtttcagaaggtttgttatcaggctcaa |
91 |
Q |
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| T |
3947216 |
gtggcagtttcagaaggtttgttctcaggctcaa |
3947249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 328
Target Start/End: Original strand, 18602683 - 18602791
Alignment:
| Q |
220 |
aacatcttgtggctttacatttcctttcacagtcactttttgtcccttcatatcaatgtcaaatgattctacacctgtgaagaacaaatgtgttattttg |
319 |
Q |
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|||||||||||| |||||||||||||| |||||||| |||||| ||| |||||||||||||| ||||| |||||||| | || ||| |||||||||| |
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| T |
18602683 |
aacatcttgtgggtttacatttcctttaacagtcaccttttgttcctccatatcaatgtcaactgattatacacctgcaatgagtaaaactgttattttg |
18602782 |
T |
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| Q |
320 |
atacaatat |
328 |
Q |
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||||||||| |
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| T |
18602783 |
atacaatat |
18602791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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