View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2543_high_3 (Length: 335)
Name: NF2543_high_3
Description: NF2543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2543_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 150 - 318
Target Start/End: Complemental strand, 3831857 - 3831689
Alignment:
| Q |
150 |
ggactatttcaaaatctcattggaaactaagaataaaataagtttaaataacctttcttttctacaagtcaaacttagtgttgcccacattgacatgtat |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3831857 |
ggactatttcaaaatctcattggaaactaagaataaaataagtttaaataccatttcttttctacaagtcaaacttagtgttgcccacattgacatgtat |
3831758 |
T |
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| Q |
250 |
acatacatagttaattcgaattccaggatcctaagcaagggaagaaaaacaaggaaaaagtgaaagaaa |
318 |
Q |
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| T |
3831757 |
acatacatagttaattcgaattccaggatcctaagcaagggaagaaaaacaaggaaaaagtgaaagaaa |
3831689 |
T |
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Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 3832007 - 3831930
Alignment:
| Q |
1 |
atttatgaatattagcaaatgtcaacttttcctaaacttttcatattgtatagtacaggataataaaataaaaacgta |
78 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3832007 |
atttatgaatatttgcaaatgtcaacttttcctaaacttttcatattgtatagtacaggataataaaataaaaacgta |
3831930 |
T |
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