View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2543_high_6 (Length: 256)
Name: NF2543_high_6
Description: NF2543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2543_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 46 - 243
Target Start/End: Complemental strand, 3947956 - 3947759
Alignment:
| Q |
46 |
tgctatttactatgaatttgaaatttttccattgtgatcattgcagactgttgtcctcaaagtaaaaatgtcatgctcaggctgttctggagcagtcaac |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3947956 |
tgctatttactatgaatttgaaatttttccattgtgatcattgcagaccgttgtcctcaaagtaaaaatgtcatgctcaggctgttcaggagcagtcaat |
3947857 |
T |
|
| Q |
146 |
agggtcttggaaaaaatggaaggtatttttaattcctagggcaaataaataatctttgttatcatgttgaattaataattgtgacaatgtaatatctc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3947856 |
agggtcttggaaaaaatggaaggtatttttaattcctagagcaaataaataatctttgttatcatgttgaattaataattgtgacaatgtaatatctc |
3947759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 18603767 - 18603675
Alignment:
| Q |
90 |
agactgttgtcctcaaagtaaaaatgtcatgctcaggctgttctggagcagtcaacagggtcttggaaaaaatggaaggtatttttaattcct |
182 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| |||| ||| |||||||| |||||||||| ||||||| |
|
|
| T |
18603767 |
agactgttgtcctcaaagtaagaatttcatgtacaggctgttctggagcagtcaagtgggttttgaaaaaaatgcaaggtattttaaattcct |
18603675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University