View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2543_low_10 (Length: 244)
Name: NF2543_low_10
Description: NF2543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2543_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 48365482 - 48365255
Alignment:
| Q |
1 |
gttgttgcaatctccattagaagaagccacactactatgctcaccactaccaacacccctgtcacaagcttgtttaattgtttaacagctgtttttgtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48365482 |
gttgttgcaatctccattagaagaagccacactactatgctcaccactaccaacacccctgtcacaagcttgtttaattgtttaacagctgtttttgtgt |
48365383 |
T |
|
| Q |
101 |
cgcataaggcatgcgccagtgctttacgttcttgataaacctttaactgaaaaatacaaacattatagtcaaaacaggatttcaatccttcactatgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48365382 |
cgcataaggcatgcgccagtgctttacgttcttgataaacctttaactgaaaaatacaaacattatagtcgaaacaggatttcaatccttcactatgatg |
48365283 |
T |
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| Q |
201 |
atgataaatttttaacaaacatataaac |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
48365282 |
atgataaatttttaacaaacatataaac |
48365255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 48385023 - 48384802
Alignment:
| Q |
1 |
gttgttgcaatctccattagaagaagccacactactatgctcaccactaccaacacccctgtcacaagcttgtttaattgtttaacagctgtttttgtgt |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||| |||| |||||||||| | |||||||| |||||||||||||||||||| ||||||||||| |||| |
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| T |
48385023 |
gttgtcgcaatctccattagaagaagccacactattatggtcaccactactaggacccctgtaacaagcttgtttaattgttttacagctgttttagtgt |
48384924 |
T |
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| Q |
101 |
cgcataaggcatgcgccagtgctttacgttcttgataaacctttaactgaaaaatacaaacattatagtcaaaacaggatttcaatccttcactatgatg |
200 |
Q |
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||| ||| || || |||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||| ||||| ||||||||||||| ||||||| |
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| T |
48384923 |
cgcttaaagcgtgtgccagtgctttacgctcttgataaaccttcaactgaaaaatataaacattatggtccaaacataatttcaatccttcgttatgatg |
48384824 |
T |
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| Q |
201 |
atgataaatttttaacaaacat |
222 |
Q |
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||| ||||||||||| ||||| |
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| T |
48384823 |
ttgacaaatttttaacgaacat |
48384802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 48397089 - 48397312
Alignment:
| Q |
1 |
gttgttgcaatctccattagaagaagccacactactatgctcaccactaccaacacccctgtcacaagcttgtttaattgtttaacagctgtttttgtgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||||| |||||||| |||| |
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| T |
48397089 |
gttgttgcaatctccattagaagaagccacactactatggtcaccactactaggacccctgtaacaagcttgtttaattgtttaaccgctgttttagtgt |
48397188 |
T |
|
| Q |
101 |
cgcataaggcatgcgccagtgctttacgttcttgataaacctttaactgaaaaatacaaacattatagtcaaaacaggatttcaatccttcactatgatg |
200 |
Q |
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| | ||||||||| || |||||| ||||||||||||| ||||| ||||| |||||||||| ||||| ||| |||||| || |||||| | | | ||| |
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| T |
48397189 |
cacttaaggcatgtgcgagtgctctacgttcttgatataccttcaactggaaaatacaaagattatggtccaaacagaatctcaatc--tga-agttatg |
48397285 |
T |
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| Q |
201 |
atgataaatttttaacaaacatataaa |
227 |
Q |
| |
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|||| |||||||||||||||||||||| |
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| T |
48397286 |
atgacaaatttttaacaaacatataaa |
48397312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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