View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2544_high_2 (Length: 381)
Name: NF2544_high_2
Description: NF2544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2544_high_2 |
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| [»] scaffold0864 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 365
Target Start/End: Complemental strand, 22589114 - 22588757
Alignment:
| Q |
11 |
cataggacaaaaggttgtgcctgtgttctaccatttagaaccatctgaagtgcgccatcagacaggagagtttggaatatcttttcaaagtcttttgtat |
110 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22589114 |
cataggacaaaaggttgtgtctgtgttctaccatttagaaccatctgaagtgcgccatcagacaggagagtttggaatatcttttcttagtcttttgtat |
22589015 |
T |
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| Q |
111 |
gaactgcgtcagctcacaagtatatttcgaaaatattatcaaagaattttgaaga---aaacttgggaccagacggaatcggtgcaaaattggagagaga |
207 |
Q |
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||||||| || || |||||||| ||||||| ||| || |||| |||||| | ||| |||| || ||| | ||| |||| |||||| |||| |
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| T |
22589014 |
gaactgcttccgcagacaagtatgtttcgaagctataatataagatttttgaccactaaaatttggaacaagaagaaatttacgcaagattggatagagg |
22588915 |
T |
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| Q |
208 |
atcttcgtcaggcagctagcattgcagggtttgaaatactcaagtcacggtaatttcattcaatagttacttttcaaatatttccatcttcattttcttc |
307 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22588914 |
ctcttcgtcaggtagctagcattgcagggtttgaaatactcaagtcacggtaatttcattcaatagttacttttcaaatatttccatcttcattttcttc |
22588815 |
T |
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| Q |
308 |
aacaaaaaatatatatcaatcttcattgcaattttttgaggcaacaacaatttatttt |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22588814 |
aacaaaaaatatatatcaatcttcattgcaattttttgaggcaacaacaatttatttt |
22588757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 4517 - 4859
Alignment:
| Q |
11 |
cataggacaaaaggttgtgcctgtgttctaccatttagaaccatctgaagtgcgccatcagacaggagagtttggaatatcttttcaaagtcttttgtat |
110 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
4517 |
cataggacaaaaggttgtgcctgtgttttaccatttagaaccatctgaagtgcgccatcagacaggagagtttggagtatcttttcaaagtcttttggat |
4616 |
T |
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| Q |
111 |
gaactgcgtcagctcacaagtatatttcgaaaatattatcaaagaattttgaagaaaacttgggaccagacggaatcggtgcaaaattggagagagaatc |
210 |
Q |
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|||||||||| || | || ||| |||| |||| || |||||| ||| || | | | |||| ||| ||||||||||||||||||| ||| |
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| T |
4617 |
gaactgcgtctgcagagaattatgtttccaaaaagtt---------ttttgattaaa-ct--gcatccgacgaaattggtgcaaaattggagagaggatc |
4704 |
T |
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| Q |
211 |
ttcgtcaggcagctagcattgcagggtttgaaatactcaagtcacggtaatttcattcaatagttacttttcaaatatttccatcttcattttcttcaac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4705 |
ttcgtcaggcagctagcattgcagggtttgaaatactcaagtcacggtaatttcattcaatagttacttttcaaatatttcaatcttcattttcttcaac |
4804 |
T |
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| Q |
311 |
aaaaaatatatatcaatcttcattgcaattttttgaggcaacaacaatttatttt |
365 |
Q |
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|||||||||| |||||| |||||||||| ||||| |||||||||||||||||||| |
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| T |
4805 |
aaaaaatataaatcaattttcattgcaagttttttaggcaacaacaatttatttt |
4859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 188 - 340
Target Start/End: Complemental strand, 5331657 - 5331501
Alignment:
| Q |
188 |
ggtgcaaaattggagagagaatcttcgtcaggcagctagcattgcagggtttgaaatactcaagtcacggtaatttcattcaatagttacttttcaaata |
287 |
Q |
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|||||||| |||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
5331657 |
ggtgcaaagttggagagaggctcttcgtcatgcagctaacataaaagggtttgaaatactcaagtcacggtaaattcattcaacagttacttttcaaata |
5331558 |
T |
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| Q |
288 |
tttccatcttcattttcttcaacaaaaa----atatatatcaatcttcattgcaatt |
340 |
Q |
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|||| ||||||||||||||| ||||||| |||||||| |||||||||||||||| |
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| T |
5331557 |
tttcaatcttcattttcttcgacaaaaaaaatatatatattaatcttcattgcaatt |
5331501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 5264252 - 5264156
Alignment:
| Q |
11 |
cataggacaaaaggttgtgcctgtgttctaccatttagaaccatctgaagtgcgccatcagacaggagagtttggaatatcttttcaaagtcttttg |
107 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5264252 |
cataggacaaaaggttgtgccattgttctaccatttagaaccatctgaagtgcgtcatcagacaggagagtttggaatatcttttcaaaatcttttg |
5264156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 5331780 - 5331684
Alignment:
| Q |
11 |
cataggacaaaaggttgtgcctgtgttctaccatttagaaccatctgaagtgcgccatcagacaggagagtttggaatatcttttcaaagtcttttg |
107 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| || ||||||||| ||||| |
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| T |
5331780 |
cataggactaaaggttgtgccagtgttctaccatttagaaccatctaaagtgcgtcatcagacaggagattttggaaaattatttcaaagttttttg |
5331684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 5184860 - 5184764
Alignment:
| Q |
11 |
cataggacaaaaggttgtgcctgtgttctaccatttagaaccatctgaagtgcgccatcagacaggagagtttggaatatcttttcaaagtcttttg |
107 |
Q |
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|||||||||| ||||| || |||||||||||| |||| || |||||||| || ||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
5184860 |
cataggacaagttgttgttccagtgttctaccatgtagacccctctgaagtacgtcatcagacaggcgagtttggaatagcttttcaaagtcttttg |
5184764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 5393227 - 5393311
Alignment:
| Q |
23 |
ggttgtgcctgtgttctaccatttagaaccatctgaagtgcgccatcagacaggagagtttggaatatcttttcaaagtcttttg |
107 |
Q |
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|||||| || |||||||||||| ||| || |||||||||| |||||| |||||||||||||||||||||||||||| ||||| |
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| T |
5393227 |
ggttgttccggtgttctaccatgtagcccctactgaagtgcgttatcagaaaggagagtttggaatatcttttcaaagttttttg |
5393311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 5444204 - 5444300
Alignment:
| Q |
11 |
cataggacaaaaggttgtgcctgtgttctaccatttagaaccatctgaagtgcgccatcagacaggagagtttggaatatcttttcaaagtcttttg |
107 |
Q |
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|||||||||| ||||||||| |||||||||| | |||| || ||||||||||| ||| || |||| ||||||||||| |||||||| |||||||| |
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| T |
5444204 |
cataggacaagtggttgtgccagtgttctaccgtgtagatccctctgaagtgcgtaatccgagaggaaagtttggaatagcttttcaacgtcttttg |
5444300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 5394456 - 5394540
Alignment:
| Q |
23 |
ggttgtgcctgtgttctaccatttagaaccatctgaagtgcgccatcagacaggagagtttggaatatcttttcaaagtcttttg |
107 |
Q |
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|||||| || |||||||||||| |||| || |||||||||||| |||||| ||| |||||||||| | ||| ||||||||||| |
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| T |
5394456 |
ggttgttccagtgttctaccatgtagatccctctgaagtgcgcaatcagaaaggtgagtttggaagggcgtttgaaagtcttttg |
5394540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 5264135 - 5264088
Alignment:
| Q |
182 |
ggaatcggtgcaaaattggagagagaatcttcgtcaggcagctagcat |
229 |
Q |
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||||| |||||||| |||||||||| ||||||||||||||||||||| |
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| T |
5264135 |
ggaattggtgcaaagttggagagaggctcttcgtcaggcagctagcat |
5264088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 363
Target Start/End: Complemental strand, 5264011 - 5263973
Alignment:
| Q |
325 |
aatcttcattgcaattttttgaggcaacaacaatttatt |
363 |
Q |
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||||||| |||||||||||| |||||||||||||||||| |
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| T |
5264011 |
aatcttctttgcaatttttttaggcaacaacaatttatt |
5263973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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