View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2544_high_5 (Length: 269)
Name: NF2544_high_5
Description: NF2544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2544_high_5 |
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| [»] scaffold0234 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 12699726 - 12699942
Alignment:
| Q |
1 |
ttcacatcagtggagaaatacttgaagggaaagaactttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagtt |
100 |
Q |
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| T |
12699726 |
ttcacatcagtggagaaatacttgaagggaaagaactttggagaaggttttcacaccagctgaggaaatgcctaagaggaataatagatactaaatagtt |
12699825 |
T |
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| Q |
101 |
ttcacatctgtggaact-aatgactgagggaaaagataaacgcgatgacaatttcgtaatattagtgctctttacaacaaacattgttcacatcagtgaa |
199 |
Q |
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| T |
12699826 |
ttcacatctgtggaactaaatgactgagggaaaagataaacgcggtgacaatttcgtaatattagtgctctttacaacaaacattgttcacatcagtgaa |
12699925 |
T |
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| Q |
200 |
tacagtcagccgaaggg |
216 |
Q |
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| T |
12699926 |
tacagtcagccgaaggg |
12699942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 2598768 - 2598668
Alignment:
| Q |
33 |
gaactttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaatgactgagggaaa |
132 |
Q |
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| T |
2598768 |
gaactttgatgaagttgttcccatcagttgaggaaatgactgaagggaaaaataaatgctaaagagttttgacatcagtggaactaatgcatgagggaaa |
2598669 |
T |
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| Q |
133 |
a |
133 |
Q |
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| T |
2598668 |
a |
2598668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0234 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0234
Description:
Target: scaffold0234; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 5049 - 5199
Alignment:
| Q |
16 |
aaatacttgaagggaaaga-actttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtgga |
114 |
Q |
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| T |
5049 |
aaatacctgatgggaaagatactttggatgaggttttcacttcaggtgaagaaatggctgaggggaaaagtagaagcccaagagttttgacatcagtgga |
5148 |
T |
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| Q |
115 |
actaatgactgagggaaaagataaacgcgatgacaatttcgtaatattagt |
165 |
Q |
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| T |
5149 |
actaatgcatgaggggaaacataaacgcggtggcaattttgtaatattagt |
5199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 9809556 - 9809427
Alignment:
| Q |
36 |
ctttggagaaggttttcacatcagctgaggaaatgcctaagaggaataatagatactaaatagttttcacatctgtggaactaatgactgagggaaaaga |
135 |
Q |
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||||||| |||||||| || |||| ||| |||||| || || |||| |||||| | | |||||| |||| |||||||||||| |||||| ||| | |
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| T |
9809556 |
ctttggacaaggttttgacttcaggtgaagaaatggctgaggggaaaaatagaagcccaggagttttgacataagtggaactaatgcatgaggggaaaca |
9809457 |
T |
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| Q |
136 |
taaacgcgatgacaatttcgtaatattagt |
165 |
Q |
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|||||||| || |||||||||||||||||| |
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| T |
9809456 |
taaacgcggtggcaatttcgtaatattagt |
9809427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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