View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2544_low_10 (Length: 237)
Name: NF2544_low_10
Description: NF2544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2544_low_10 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: scaffold0049 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 63902 - 64124
Alignment:
| Q |
1 |
ttgcatcccagtaatgaaaatcagagtcaaaaactcatagtcgaatgagaaattgaaacacagtcagaagctcagagagcgagcagtgtcattctaagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
63902 |
ttgcatcccagtaatgaaaatcagagtcaaaaactcatagtcgaatgagaaattgaaacacagtcagaagctcagatagcgagcagtgtcattccaagtc |
64001 |
T |
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| Q |
101 |
aatgcaag-tgtgaattaagcaagtatcatgaacataaaccaaacacttaatttatatcactttcatttcttatcagatctgaaacaaaagaaaacaata |
199 |
Q |
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|||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
64002 |
aatgcaagttgtgaattaagcaagtatcatg-acctaaaccaaacacttaatttatatcattttcaattcttatcagatctgaaacaaaagaaaacaata |
64100 |
T |
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| Q |
200 |
tcaaacacataccatttgtttttg |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
64101 |
tcaaacacataccatttgtttttg |
64124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 22900595 - 22900495
Alignment:
| Q |
118 |
agcaagtatcatgaacataaaccaaacacttaatttatatcactttcatttcttatcagatctgaaacaaaagaaaacaatatcaaacacataccatttg |
217 |
Q |
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|||||||||||||| |||||||||| |||| ||||||| | || ||||||||||| ||| || ||||||| ||||||||| ||||||||||| |||| |
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| T |
22900595 |
agcaagtatcatgaccataaaccaa-cactgaatttatgttgctaccatttcttatctgatatgtaacaaaataaaacaataagaaacacataccgtttg |
22900497 |
T |
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| Q |
218 |
tt |
219 |
Q |
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|| |
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| T |
22900496 |
tt |
22900495 |
T |
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