View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2544_low_8 (Length: 251)
Name: NF2544_low_8
Description: NF2544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2544_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 40471568 - 40471337
Alignment:
| Q |
1 |
gaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagcaagtaaaaggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471568 |
gaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagcaagtaaaaggaa |
40471469 |
T |
|
| Q |
101 |
gcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40471468 |
gcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgttta |
40471369 |
T |
|
| Q |
201 |
taaaggtgaacacaaccatggaaagccacaac |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
40471368 |
taaaggtgaacacaaccatggaaagccacaac |
40471337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 26332607 - 26332543
Alignment:
| Q |
67 |
tggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac |
131 |
Q |
| |
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| T |
26332607 |
tggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccgcgtagttattacaagtgcac |
26332543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 16863604 - 16863821
Alignment:
| Q |
1 |
gaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacagaagcaagtaaaaggaa |
100 |
Q |
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| T |
16863604 |
gaggaggaccaaaaagcattaccatccacaaataatgttgatagaccttcgtatgatggatataactagagaaaatatggaaagaag------------- |
16863690 |
T |
|
| Q |
101 |
gcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgttta |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16863691 |
-cgagtatcttcgaagttattacaagtgcacatatcctaattatccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgttta |
16863789 |
T |
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| Q |
201 |
taaaggtgaacacaaccatggaaagccacaac |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
16863790 |
taaaggtgaacacaaccatggaaagccacaac |
16863821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 2056300 - 2056406
Alignment:
| Q |
55 |
gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaa |
154 |
Q |
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||||||||||| |||||||||||||| || |||||||| || || |||||||| ||||||||||| |||||||| || || | |||||||||||||||| |
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| T |
2056300 |
gatggatataattggagaaaatatggccaaaagcaagttaagggtagcgagtaccctcgaagttactacaagtgtactcattcaaattgtccagttaaaa |
2056399 |
T |
|
| Q |
155 |
agaaagt |
161 |
Q |
| |
|
||||||| |
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|
| T |
2056400 |
agaaagt |
2056406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 26967130 - 26967036
Alignment:
| Q |
53 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtcca |
147 |
Q |
| |
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|||||||||| || ||||||||||||||||| || ||||| |||||||| || |||| |||||||||| || ||||| || |||||||||||| |
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| T |
26967130 |
atgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtcca |
26967036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 18876394 - 18876301
Alignment:
| Q |
53 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtcc |
146 |
Q |
| |
|
||||||| || |||||||| ||||| |||||||| || || ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||| |
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| T |
18876394 |
atgatggctacaactggaggaaatacggacagaaacaggtgaaaggtagcgagtttcctcgaagttattacaagtgcacgcatcctaactgtcc |
18876301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 31615430 - 31615312
Alignment:
| Q |
53 |
atgatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaa |
152 |
Q |
| |
|
|||||||||| || ||| ||||||||||||| |||||||| || ||||| || |||| ||||||| ||||| |||||||| ||||| ||||| || |
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| T |
31615430 |
atgatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatgcacataccctaactgtcctacaaa |
31615331 |
T |
|
| Q |
153 |
aaagaaagttgaaagatca |
171 |
Q |
| |
|
||||||||||| |||||| |
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| T |
31615330 |
gaagaaagttgagagatca |
31615312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 3669194 - 3669270
Alignment:
| Q |
55 |
gatggatataactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcac |
131 |
Q |
| |
|
|||||||| || ||||||||||||||| |||| ||||| |||||||| || |||| ||||||||||||||||||| |
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| T |
3669194 |
gatggatacaagtggagaaaatatggagagaaacaagtgaaaggaagtgaaaatccaagaagttattacaagtgcac |
3669270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 32110321 - 32110260
Alignment:
| Q |
64 |
aactggagaaaatatggacagaagcaagtaaaaggaagcgagtatcctcgaagttattacaa |
125 |
Q |
| |
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|||||||| || |||||||| || ||||| ||||| |||||| |||||||||||||||||| |
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|
| T |
32110321 |
aactggaggaagtatggacaaaaacaagtgaaaggttgcgagtttcctcgaagttattacaa |
32110260 |
T |
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