View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2545_low_1 (Length: 576)
Name: NF2545_low_1
Description: NF2545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2545_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 28 - 344
Target Start/End: Original strand, 39972682 - 39972981
Alignment:
| Q |
28 |
ttaaattataaaattaattcgtctaataactacaaattagttgattgtataaacatttgatacgtt--ggctttattttaaatttgtaattttaaacttt |
125 |
Q |
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| T |
39972682 |
ttaaattataaaattaattcgtctaataactacaaattaattgattgtataaacatttgatacgtttagacttcattttaaatttgtaattttaaacttc |
39972781 |
T |
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| Q |
126 |
tcaacaattaatttgagtgtgtatttgtgatatggatgtgcgttttcgcactttgactgattagagattcacaaaaatcacgttcaacaagcattgggac |
225 |
Q |
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| T |
39972782 |
tcaacaattagtttgagtgtgtatttgtgatatagatgtgctttttcacactttgactgattagagattcacaaaaatcacgttcaacaagcattgggac |
39972881 |
T |
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| Q |
226 |
gcaagaaaaccccctttaacctaaagcatatgtttagtgtgtgtgacttcattgcaaaactctttagaacaaaaaattataatattagtagaaaatattt |
325 |
Q |
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| T |
39972882 |
gcaagaaaacctcctttaacctaaagcatatgtttagtgtg-------------------tctttagaacaaaaaattataatattagtagaaaatattt |
39972962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 445 - 564
Target Start/End: Original strand, 39973069 - 39973188
Alignment:
| Q |
445 |
cattttcttacatgtgcactcaaattgtgtgtccacatccacatgcttgtgatcatgtaagatattctcaatattaacgtatgaaacaaatcactctgca |
544 |
Q |
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| T |
39973069 |
cattttcttgcatgtgcactcaaattgtgtgtccacatccacatgcttgtgatcatgtaagatattctcaatattaacgtaggaaacaaatcactctgca |
39973168 |
T |
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| Q |
545 |
ttgttaacttgtgaaatatt |
564 |
Q |
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| T |
39973169 |
ttgttaacttgtaaaatatt |
39973188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 382
Target Start/End: Original strand, 39972975 - 39973006
Alignment:
| Q |
351 |
gtatttaaacacagtcagttactcatactctt |
382 |
Q |
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| T |
39972975 |
gtatttaaacacagtcagttactcatactctt |
39973006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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